View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_12 (Length: 337)
Name: NF18992_low_12
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 30813750 - 30813897
Alignment:
| Q |
83 |
tgattcataattaatgataagttgcaaggtcaatcgagagaagacatgtccttaattcaaacccaaatgttttttgcattacaattggagagtgcgagta |
182 |
Q |
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| T |
30813750 |
tgattcataattagtgataagttgcaaggtcgattgagagaagacatatccttaatccaaacccaaatgtttattgcattacaattggagagtgcgagta |
30813849 |
T |
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| Q |
183 |
atgaagtccatcacgttacaattcaagtgtaatggtctaatttagact |
230 |
Q |
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| T |
30813850 |
gtgaagtctctcacgttacaattcaagtgtaatggtctaatttagact |
30813897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 30813918 - 30814022
Alignment:
| Q |
219 |
ctaatttagactaaagtccctctataaattgaaaattaaaccatatgaaacatgatatagtataatttaaattttcatgaaatattctaatctacttttt |
318 |
Q |
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| T |
30813918 |
ctaatttagactaaagcccctctttaaattgaaaattaaaccatatgaaacatgatatagtataattcaaattttgatgaaatattctaatctacttttt |
30814017 |
T |
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| Q |
319 |
atgtc |
323 |
Q |
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||||| |
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| T |
30814018 |
atgtc |
30814022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 30819173 - 30819272
Alignment:
| Q |
219 |
ctaatttagactaaagtccctctataaattgaaaattaaaccatatgaaacatgatatagtataatttaaattttcatgaaatattctaatctacttttt |
318 |
Q |
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||||||||||| |||||||||| || ||||||||||||| ||||||| | |||||| ||||||| || |||| ||||||||||||||| |||||||| |
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| T |
30819173 |
ctaatttagaccgaagtccctctttagattgaaaattaaa---tatgaaataagatataatataattcaagttttgatgaaatattctaatttacttttt |
30819269 |
T |
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