View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_20 (Length: 259)
Name: NF18992_low_20
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 13058876 - 13059107
Alignment:
| Q |
13 |
ttctacaaaatcattgattaatacttaaaatactgagtagatactctttagataatagaaaaacatcatagaaactaaacataaatgccaatagtataca |
112 |
Q |
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| T |
13058876 |
ttctacaaaatcattgattaatacttaaaatactgagtagatactctttagataatagaaaaacatcatagaaactaaacataaatgccaatagtataca |
13058975 |
T |
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| Q |
113 |
taaatgctaaaaaatagcagaataaacaaaattaaaggggtggttatagttaataattataattaagctttatcatttgtcactaacattcaaaatcaaa |
212 |
Q |
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| T |
13058976 |
taaatgctaaaaaatagcaaaataaacaaaattaaaggggtggttatagttaataattataattaagctttatcatttgtcactaacattcaaaatcaaa |
13059075 |
T |
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| Q |
213 |
acccaatataacttcactattaatttcagttc |
244 |
Q |
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| T |
13059076 |
atccaatataacttcactattaatttcagttc |
13059107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 21154274 - 21154209
Alignment:
| Q |
84 |
aaactaaacataaatgccaatagtatacataaatgctaaaaaatagcagaataaacaaaattaaag |
149 |
Q |
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| T |
21154274 |
aaacttaacataaataccaacagtatacataaatactcaaaaatagcaaaatacatgaaattaaag |
21154209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 2200029 - 2199930
Alignment:
| Q |
138 |
acaaaattaaaggggtggttatagttaataattataattaagctttatcatttgtcactaacattcaaaatcaaaacccaatataacttcactattaatt |
237 |
Q |
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| T |
2200029 |
acaaaattaaaggggtagctataattgaaacttataattaacctttataatttgtcactaacactcaaaaccaaaacacaatataacttaactactaatt |
2199930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 32293019 - 32292925
Alignment:
| Q |
84 |
aaactaaacataaatgccaatagtatacataaatgctaaaaaatagcagaataaacaaaattaaaggggtggttatagttaataattataattaa |
178 |
Q |
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|||||||||| |||| ||||||| |||| ||||| || | |||||| | |||| |||||||||||||||| | ||| |||||||||| |||||| |
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| T |
32293019 |
aaactaaacagaaatcccaataggatacgtaaatactcagaaatagaaaaatacacaaaattaaaggggtaatcatacttaataattacaattaa |
32292925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 47369724 - 47369807
Alignment:
| Q |
138 |
acaaaattaaaggggtggttatagttaataattataattaagctttatcatttgtcactaacattcaaaatcaaaacccaatat |
221 |
Q |
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|||||||||||||| | || || ||||| ||||||| ||| || |||||||||||||||||| ||||| |||||||||||| |
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| T |
47369724 |
acaaaattaaagggctaattgtacttaatgattataactaattttggtcatttgtcactaacattgaaaataaaaacccaatat |
47369807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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