View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_3 (Length: 564)
Name: NF18992_low_3
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 265 - 548
Target Start/End: Complemental strand, 45071475 - 45071191
Alignment:
| Q |
265 |
tcaatcctcacttttctctatacttagtgttaattaagatcactttgttttcgaatctacataatgtatagaagcaataatgaatttctctaataatgaa |
364 |
Q |
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| T |
45071475 |
tcaatcctcacttttctctatacttaatgttaattaagatcactttgttttcgaatctacataatgtatagaagcaataatgaatttctctaataatgaa |
45071376 |
T |
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| Q |
365 |
caacatttagtaaagcaataacaaagtgcaagcgcatactaattgtttctagttcatacactttgaagctcatctctatgattaaagaaaacaaatcgca |
464 |
Q |
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| T |
45071375 |
caacatttagtaaagcaataacaaagtgcaagcgcatactaattgtttctagttcatacactttgaagctcatctctatgattaaagaaaacaaatcgca |
45071276 |
T |
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| Q |
465 |
tgccattattgttccaatctctcacacacaaagtatttggggaaggttcatatgtacac-aaaacttcctcttcaaagtagtttt |
548 |
Q |
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| T |
45071275 |
tgccattattgttccaatctctcacacacaaagtatttggggaaggttcatatgtacacaaaaacttcctcttcaaagtagtttt |
45071191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 45071702 - 45071474
Alignment:
| Q |
10 |
tagaaaaatgttcggtcgactccggatcaaaagaagaatagtaagaaagactgaccataaacgtaaatcaggcaaactaagatatctatttaaggtaaat |
109 |
Q |
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| T |
45071702 |
tagaaaaatgtttggtagtctcctgatcaatagtagaaccctaagaaagaccgaccttaaacgtaaattaggcaaactaagacatctatttaaggtaaat |
45071603 |
T |
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| Q |
110 |
aatattaggtcaggttcccaacagaaatttatgttacgtttgaaacattgccaaatcacattacatttatagttaaagacaggatttcatttcttgtact |
209 |
Q |
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| T |
45071602 |
aacattagctcaggttcccaacagaaatttatgttacgtttgaaacattgccaaattacattacatttatagttaaagacaggatttcatttcttgtact |
45071503 |
T |
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| Q |
210 |
ataatattggttgtgcattccaacaactc |
238 |
Q |
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| T |
45071502 |
ataatattggttgtgcattccaacaactc |
45071474 |
T |
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