View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_7 (Length: 429)
Name: NF18992_low_7
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 5300747 - 5301160
Alignment:
| Q |
1 |
ctcagttgcaacgtgattaggaataacaactacatctgtctcagttgcaactggatcaggaacaactaccactggcatggagttcatgtcgagttctagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5300747 |
ctcagttgcaacgtgattaggaataacaactacatctgtctcagttgcaactggatcaggaacaactaccactggcatggagttcatgtcgacttctagt |
5300846 |
T |
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| Q |
101 |
gacttgggctgaacttcggcaccaacatcatttgtaatctcctcccaaaatgtcattgatgagtcgagcagatccaattgttccaagtttaatgatagac |
200 |
Q |
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| T |
5300847 |
gacttgggctgaacttcggcaccaacatcatttgtaatctcctcccaaaatgtcattgatgagtcgagcagatccaattgttccaagtttaatgatagac |
5300946 |
T |
|
| Q |
201 |
gagacacactcgggtcgttttccttgtgtattacatgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatcct |
300 |
Q |
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| T |
5300947 |
gagacacacccgggtcgttttctttgtgtattacatgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatctt |
5301046 |
T |
|
| Q |
301 |
cctttttcgctcctttttcccaggtttcttcagcacttgatcaacagaagagagcacactttgatgtttcttttccaaagtttccaaatgacccttcatg |
400 |
Q |
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| T |
5301047 |
ccttttttgctcctttttcccaggtttcttcagcacttgaccaacagaagagagcacactttgatgtttcttttccaaagtttccaaatgacccttcatg |
5301146 |
T |
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| Q |
401 |
tactgtgatgttat |
414 |
Q |
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| T |
5301147 |
tactgtgatgttat |
5301160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52000368 - 52000304
Alignment:
| Q |
1 |
ctcagttgcaacgtgattaggaataacaactacatctgtctcagttgcaactggatcaggaacaa |
65 |
Q |
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| T |
52000368 |
ctcagttgcaacatgattaggaacaacaactagcactggcttagttgcaacaggatcaggaacaa |
52000304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 15621168 - 15621096
Alignment:
| Q |
236 |
tgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatcctcctttttc |
308 |
Q |
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| T |
15621168 |
tgagaagttcaaacatgatcttcaatgattgctacattataaaaatgattctttctttgaatcctcctttttc |
15621096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15621413 - 15621297
Alignment:
| Q |
1 |
ctcagttgcaacgtgattaggaataacaactacatctgtctcagttgcaactggatcaggaacaactaccactggcatggagttcatgtcgagttctagt |
100 |
Q |
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|||||||||||| ||| ||||||||| |||||| | | ||| |||| |||||||| |||||||||||| ||||| |||||||||| ||| ||| |
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| T |
15621413 |
ctcagttgcaactagatcgggaataacagctacattcggcccagatgcatctggatcaagaacaactaccaatggcacatagttcatgtcactttccagt |
15621314 |
T |
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| Q |
101 |
gacttgggctgaacttc |
117 |
Q |
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|||||||| ||||||| |
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| T |
15621313 |
gacttggggcgaacttc |
15621297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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