View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_8 (Length: 428)
Name: NF18992_low_8
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 11903525 - 11903125
Alignment:
| Q |
11 |
cagagacagttaatagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaact |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903525 |
cagaaacagttaatagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaact |
11903426 |
T |
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| Q |
111 |
actgaagttgaacaaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaa |
210 |
Q |
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| T |
11903425 |
actgaagttgaacaaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaa |
11903326 |
T |
|
| Q |
211 |
gatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgacca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903325 |
gatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgacca |
11903226 |
T |
|
| Q |
311 |
cagtcattgatggaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatc |
410 |
Q |
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| T |
11903225 |
cagtcattgatggaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatc |
11903126 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
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| |
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| T |
11903125 |
t |
11903125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 79 - 286
Target Start/End: Original strand, 11730745 - 11730955
Alignment:
| Q |
79 |
gaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctgttattgtcattgttggtgttcctggaa |
175 |
Q |
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| T |
11730745 |
gaaaaagagaagaaagagcttgtagatcaactacttaacttgaacaattctactgatgattttcatgttggtgtttttgtcattgttggtgttccgggaa |
11730844 |
T |
|
| Q |
176 |
ttgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctt |
275 |
Q |
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| T |
11730845 |
tagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaaccaatttggatcgatcttctacacgagacctt |
11730944 |
T |
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| Q |
276 |
tgatgtggaat |
286 |
Q |
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||||||||||| |
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| T |
11730945 |
tgatgtggaat |
11730955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 11730274 - 11730461
Alignment:
| Q |
52 |
tttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctg |
148 |
Q |
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||||||||| |||| ||||||| |||||| |||| ||||| ||||||||||||| |||||| |||| || ||| || |||||| ||| ||| || |
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| T |
11730274 |
tttgagaaagttactgtggttggaagagaatatgagaagaaagagattatagatcgactacttaagtggatcaaatctactgatgcttttcatgttggtg |
11730373 |
T |
|
| Q |
149 |
ttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttgg |
236 |
Q |
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| T |
11730374 |
tttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgg |
11730461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 11859136 - 11859234
Alignment:
| Q |
157 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
255 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11859136 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
11859234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 12037924 - 12038032
Alignment:
| Q |
147 |
tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca |
246 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| || ||||| |||||| || ||||||| || ||||| |
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| T |
12037924 |
tgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
12038023 |
T |
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| Q |
247 |
atttggatc |
255 |
Q |
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| T |
12038024 |
atttggatc |
12038032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 11826968 - 11827061
Alignment:
| Q |
157 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaattt |
250 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||| ||||| |
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| T |
11826968 |
attgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaattttgaattcgaacaaattt |
11827061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 11859049 - 11859104
Alignment:
| Q |
70 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
125 |
Q |
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||||||||||||| || |||||||||||||||||| |||| |||||| ||||||| |
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| T |
11859049 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
11859104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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