View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_10 (Length: 549)
Name: NF18993_high_10
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_10 |
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| [»] scaffold0191 (2 HSPs) |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 17745 - 17215
Alignment:
| Q |
1 |
tttaattttaatatgaattgatcaaacgtctacaaatgtcttgaccgcgtgaatgtgggaaatccctgactgcgtattgagtaacatttaacactaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17745 |
tttaattttaatatgaattgatcaaacgtctacaaatgtcttgaccgcgtgaatgtgggaaatccctgactgcggattgagtaacatttaacactaaaga |
17646 |
T |
|
| Q |
101 |
tggaattgagagtgaggaatgttacataaaaaggcgataaggcgaaatgggttggctcttcatcaaatgttgaatgtttgggcgagttcgcttgggaacg |
200 |
Q |
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| T |
17645 |
tggaattgagagtgaggaatgttacataaaaaggcgatacggcgaaatgggttggctcttcatcaaatgttgaatgtttgggcgagttcgcttgggaacg |
17546 |
T |
|
| Q |
201 |
attccgagtaaccttttgaattgaatcttgttggagtcacaataatgcatatcagccaaggcaatagcaacagacatcccacatgtttcactacatacac |
300 |
Q |
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| T |
17545 |
attccgagcaaccttttgaattgaatcttgttggagtcacaataatgcatatcagccaaggcaatagcaacagacatcccacatgtttcactacatacac |
17446 |
T |
|
| Q |
301 |
acacattcaattcaatcataataagtataagcacaaacactaaaaatgaagaaagaaagtagaaaacgaacattgaattgaatagataccatttgaaaaa |
400 |
Q |
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| T |
17445 |
acacattcaattcaatcataataagtataagcacaaacactaaaaatgaagaaagaaagtagaaaacgaacattgaattgaatagataccatttgaaaaa |
17346 |
T |
|
| Q |
401 |
ggcacttccatcagaagcacgaacacgacgaatggcgcaaacccttttgctaactcttcttcttcgtgccatcagcagtgatgcaacgactgatgtttgt |
500 |
Q |
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| T |
17345 |
ggcacttccatcagaagcacgaacacgacgaatggcgcaaacccttttgctaactcttcttcttcgtgccatcagcagtgatgaaacgactaatgtttgt |
17246 |
T |
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| Q |
501 |
ccccaaattgatgaaaagtagggccgctact |
531 |
Q |
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| T |
17245 |
ccccaaattgatgaaaagtagtgccgctact |
17215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 18564 - 18444
Alignment:
| Q |
105 |
attgagagtgaggaatgttacataaaaaggcgataaggcgaaatgggttggctcttcatcaaatgttgaatgtttgggcgagttcgcttgggaacgattc |
204 |
Q |
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|||||| |||||||||| |||||| |||| || ||||||||||||||||| ||||||| || |||||||| || ||| |||||||||||| | |||| |
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| T |
18564 |
attgagggtgaggaatgatacatagaaagacggcaaggcgaaatgggttggttcttcatgaattgttgaatattcgggagagttcgcttggagaatattc |
18465 |
T |
|
| Q |
205 |
cgagtaaccttttgaattgaa |
225 |
Q |
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|||||||| |||||||||||| |
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| T |
18464 |
cgagtaacattttgaattgaa |
18444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 140 - 448
Target Start/End: Complemental strand, 10430431 - 10430122
Alignment:
| Q |
140 |
aggcgaaatgggttggctcttcatcaaatgttgaatgtttgggcgagttcgcttgggaacgattccgagtaaccttttgaattgaatcttgttggagtca |
239 |
Q |
| |
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|||||||||||||||| ||||| | || |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
10430431 |
aggcgaaatgggttggttcttcgtgaattgttgaatatttgggagagttcgcttgggaacaattccgagtaaccttttgaattgaatgttgttagagtca |
10430332 |
T |
|
| Q |
240 |
caataatgcatatcagccaaggcaatagcaacagacatcccacatgtttcac----tacatacacacacattcaattcaatcataataagtataagcaca |
335 |
Q |
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||| |||| ||||||||||| ||||| ||||| ||| ||| |||||||| |||||||||||| ||||||| |||||||||||||| |
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| T |
10430331 |
caa-------------ccaatgcaatagcaacggacataccacaagttccactacatacatacatacacattcaatttaatcatattaagtataagcaca |
10430245 |
T |
|
| Q |
336 |
aacactaaaaat------gaagaaagaaagtagaaaacgaacattgaattg----aatagataccatttgaaaaaggcacttccatcagaagcacgaaca |
425 |
Q |
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| T |
10430244 |
aaaatttaaaatacaaaaaatgaaagaaagaagaaaaggaacattgaattgaattaatgcataccatttgaaaaaagcacttccatcaagagcacgaaga |
10430145 |
T |
|
| Q |
426 |
cgacgaatggcgcaaaccctttt |
448 |
Q |
| |
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||| ||| ||||||||||||||| |
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| T |
10430144 |
cgatgaacggcgcaaaccctttt |
10430122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 10767263 - 10767210
Alignment:
| Q |
418 |
cacgaacacgacgaatggcgcaaacccttttgctaactcttcttcttcgtgccat |
472 |
Q |
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| T |
10767263 |
cacgaacacgatgaatggcgcaaaccctttt-ttaactcttcttctttgtgccat |
10767210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 465
Target Start/End: Complemental strand, 10767485 - 10767410
Alignment:
| Q |
390 |
catttgaaaaaggcacttccatcagaagcacgaacacgacgaatggcgcaaacccttttgctaactcttcttcttc |
465 |
Q |
| |
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|||||||||||||||||||||| || |||| |||| |||| |||| |||||| ||| |||||||||||||||| |
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| T |
10767485 |
catttgaaaaaggcacttccattaggagcatgaacttgacggttggcacaaaccacttttctaactcttcttcttc |
10767410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 256 - 448
Target Start/End: Complemental strand, 35859 - 35657
Alignment:
| Q |
256 |
ccaaggcaatagcaacagacatcccacatgtttcactacatacacacacattcaattcaatcataataagtataagcacaaacactaaaaatgaa----- |
350 |
Q |
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|||| ||||||||||| ||||| ||||| ||| ||||||||||| | |||||||||| ||| || |||||||||||||||| | | ||||| | |
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| T |
35859 |
ccaatgcaatagcaacggacataccacaagttccactacatacatatacattcaatttaattgtattaagtataagcacaaaaatttaaaatacaaaaaa |
35760 |
T |
|
| Q |
351 |
-gaaagaaagtagaaaacgaacattgaattgaatagat----accatttgaaaaaggcacttccatcagaagcacgaacacgacgaatggcgcaaaccct |
445 |
Q |
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||||||||| |||||| |||||||||||||||| || ||||||||||||| |||||||||||| |||||||| |||| ||| |||||||||||| |
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| T |
35759 |
tgaaagaaagaagaaaaggaacattgaattgaattaatgcataccatttgaaaaaagcacttccatcaagagcacgaagacgatgaacggcgcaaaccct |
35660 |
T |
|
| Q |
446 |
ttt |
448 |
Q |
| |
|
||| |
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|
| T |
35659 |
ttt |
35657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 108605 - 108528
Alignment:
| Q |
136 |
gataaggcgaaatgggttggctcttcatcaaatgttgaatgtttgggcgagttcgcttgggaacgattccgagtaacc |
213 |
Q |
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|||| ||| ||||||||||| ||| |||||||||||||||||||||| |||||||| ||| ||| ||| ||||||||| |
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| T |
108605 |
gatatggcaaaatgggttggttctacatcaaatgttgaatgtttgggtgagttcgcatggaaacaatttcgagtaacc |
108528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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