View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_100 (Length: 255)
Name: NF18993_high_100
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 24224168 - 24224394
Alignment:
| Q |
11 |
cagagaatcaaacacacgaaataacatattcgacagttccaaatccaaaaactaaccatacagaaaagtagacaaagaaaagaaaaacaggcacaaatga |
110 |
Q |
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| T |
24224168 |
cagagaatcaaacacacgaaataacatattcgacagtttcaaatccaaaaactaaccatacagaaaagtagacaaagaaaagaaaaacaggcacaaatga |
24224267 |
T |
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| Q |
111 |
taaatccatcaaatcttaagttttaatgacttcaatccaacatccagaaacaataactgtaattaacacacataacaaacacacaagaaaaattccccaa |
210 |
Q |
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| T |
24224268 |
taaatccatcaaatcttaagttttaatgacttcaatccaacatccagaaacaataactgtaattaacacacataacaaacacacaagaaaaattccccaa |
24224367 |
T |
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| Q |
211 |
atctaacacattcattcaagtataaat |
237 |
Q |
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| T |
24224368 |
atctaacacattcattcaagtataaat |
24224394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 24215395 - 24215444
Alignment:
| Q |
101 |
gcacaaatgataaatccatcaaatcttaagttttaatgacttcaatccaa |
150 |
Q |
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|||||| ||| |||||| |||||||| |||||||||| |||||||||||| |
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| T |
24215395 |
gcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaa |
24215444 |
T |
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