View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_101 (Length: 252)
Name: NF18993_high_101
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_101 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 27045839 - 27046071
Alignment:
| Q |
18 |
caagtgactcataagttgtaactggttcactttcactatcaccttccttcatcaaactcatcttaagnnnnnnnatcacctcattctcaaccttaaaaca |
117 |
Q |
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| T |
27045839 |
caagtgactcataagttgtaactggttcactttcactaccaccttccttcatcaaactcatcttaagtctttttatcacctcattctcaaccttaaaaca |
27045938 |
T |
|
| Q |
118 |
atagattttaataactgtttctggttgaactaaaggtgaaaatgcaataggttcttttggtt------------gaagtggttgtttggtacttgttgaa |
205 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27045939 |
atagattttaataactgtttttggttgaactaaaggtgaaaatgcaataggttcttttggttgaagtaatggtggaagtggttgtttggtacttgttgaa |
27046038 |
T |
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| Q |
206 |
gcaccaactagtctctctctttcccacacaggt |
238 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
27046039 |
gccccaactagtctctctctttcccacacaggt |
27046071 |
T |
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