View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_103 (Length: 251)
Name: NF18993_high_103
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 21696470 - 21696690
Alignment:
| Q |
17 |
aagaagaacgtcgaaggttaagaagtaaagtagtcgagtcataatttgtgggaactaacatggatttagagaacaaaatatattcagacagaattacatt |
116 |
Q |
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| T |
21696470 |
aagaagaatgttgaaggttaagaagtaaagtagtcgagtcataatttgtggtaactaacacggatttagagaa---aatatattcagacagaattacatt |
21696566 |
T |
|
| Q |
117 |
caggtttggatcgagtgatccatatttccatcaccaatcctataacgcaaattgatgttgttcgatgttttgtccgttgatgagtagggttttgtgaggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21696567 |
caggtttggatcgagtgatccatatttccatcaccaatcctataacgcaaattgatgttgttcgatgttttgtccgttgatgagtagggttttgtgaggc |
21696666 |
T |
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| Q |
217 |
gtttcctttttactttaatttcat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
21696667 |
gtttcctttttactttaatttcat |
21696690 |
T |
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