View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_11 (Length: 540)
Name: NF18993_high_11
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 164 - 540
Target Start/End: Original strand, 32652339 - 32652712
Alignment:
| Q |
164 |
attatgtttttcttctgaaagcactcaaatgtaacagcatttagatggcaactcaattaatctacaactgtagcaacatttaaatggtaactcaatctac |
263 |
Q |
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| T |
32652339 |
attatgtttttcttctgaaagcactcaatt-taacagcatttagatggcaactcaattaatctacaactgtagcaacattttaatggtaactcaatctac |
32652437 |
T |
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| Q |
264 |
aaacaacatactgtgacaactgtagcagcatttatattttcatgtttgcattgcaaccccaattgcagctgcatgtatcataattaactgcaatgttttt |
363 |
Q |
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| T |
32652438 |
aaacaacatattgtgacaactgtagcagcatttatattttcatgtttgcattgcaaccccaattgcagctgcatgtatcataattaactgcaatgttttt |
32652537 |
T |
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| Q |
364 |
tgcaatatccatggatcatgacggaactgtgactgttatttaaaatcttaaaaataccaatttcaagttaagtttaatcatattgtggtgtgacccctaa |
463 |
Q |
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| T |
32652538 |
tgcaatatccatggatcatgacggaactgtgactgttatttaaaaccttaaaaataccaatttcaagttaagtataatcata--gtggtgtgacccctaa |
32652635 |
T |
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| Q |
464 |
ctcctgtgaaatgtttgacatatagatgacatttgatgcaatgtgtggtatgctgatgagcatcacagaggattcat |
540 |
Q |
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| T |
32652636 |
ctcctgtgaaatgtttgacatatagatgacatttgatgcaatgtgtggtatgctgatgagcatcacagaggattcat |
32652712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 32652132 - 32652286
Alignment:
| Q |
17 |
accattctccatgacctctctctatgcatttatcacaaaatttgataaattgttgtgtggaaggctgcaaaagctagaagaaagcgggaaaagtttcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32652132 |
accattctccatgacctctctctatgcatttatcacaaaatttgataaattgttgtgtggaaggctgcaaaagctagaagaaagtgggaaaagtttcaaa |
32652231 |
T |
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| Q |
117 |
acgttggacttctgcatggaggtaaaaacagttttttcccagctttgattatgtt |
171 |
Q |
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| T |
32652232 |
acgttggacttctgcatggaggtaaaaacagttttttcccagctttgattatgtt |
32652286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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