View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_115 (Length: 241)
Name: NF18993_high_115
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_115 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 42936704 - 42936488
Alignment:
| Q |
1 |
tttgcaaaactaagattgctactgaattataactggnnnnnnnnnttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaa |
100 |
Q |
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|||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936704 |
tttggaaaactaagattgctactgaattatcactggaaaaaaaaattactccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaa |
42936605 |
T |
|
| Q |
101 |
tacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936604 |
tacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatatttt |
42936505 |
T |
|
| Q |
201 |
ccggtctttgtattata |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
42936504 |
ccggtctttgtattata |
42936488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 26084600 - 26084537
Alignment:
| Q |
46 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttat |
109 |
Q |
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| T |
26084600 |
ttaccccaatacgaaaatccctaaattgataaacaaactaaacccaaggcgttaatacttttat |
26084537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9046197 - 9045991
Alignment:
| Q |
1 |
tttgcaaaactaagattgctactgaattataactggnnnnnnnnnttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
9046197 |
tttgcaaaactaagattgctactgaattatcactggaaaaaaaa-ttaccccaatacgaaaatccctagattgataaacaaactaaacccaaggtgttaa |
9046099 |
T |
|
| Q |
101 |
tacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatatttt |
200 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9046098 |
tacttttattttggctctcagctctgttccttttatgtagaatggta------gaacaataaataagaggagtc--aattaaaatcaggttcaatatttt |
9046007 |
T |
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| Q |
201 |
ccggtctttgtattat |
216 |
Q |
| |
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|| ||||||||||||| |
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| T |
9046006 |
ccagtctttgtattat |
9045991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 21763176 - 21763006
Alignment:
| Q |
46 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttggctctcagctccgctccttttatgtagaatga |
145 |
Q |
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|||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
21763176 |
ttaccctaatatgaaaatccctaaattgataaacaaactaaacccaaggggttaatacttttattttggctctcagctctgctcctgttatgtagaatag |
21763077 |
T |
|
| Q |
146 |
tagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatattttccggtctttgtattat |
216 |
Q |
| |
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||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||| |
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|
| T |
21763076 |
cagcgctggaacaataaataagaggaggcaaaattaaaaccaggttaaatattttccagtctttgtattat |
21763006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 12806805 - 12806861
Alignment:
| Q |
58 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttgg |
114 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
12806805 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttgg |
12806861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 14444429 - 14444485
Alignment:
| Q |
58 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttgg |
114 |
Q |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
14444429 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttgg |
14444485 |
T |
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