View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_116 (Length: 241)
Name: NF18993_high_116
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_116 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0692 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 12891508 - 12891734
Alignment:
| Q |
21 |
gtcggcttatgtattatctatgtttcacgatcaaaaggacttttgcactacgcagcatgttagtacta-----cgttaaccatttttgttttcatctatc |
115 |
Q |
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| T |
12891508 |
gtcggcttatgtattatccgtgtttcacgatcaaagggacttttgcactaggtagcatgttagtattataatacgttaaccatttttgttttcatctaac |
12891607 |
T |
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| Q |
116 |
tgattaagcttttttctgatagttgtttcacaacgttttcttcaaatcgccactgatcaatgattt-attggtctgtgaaattgtacaatctgcatgtta |
214 |
Q |
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| T |
12891608 |
cgattaagcttttttcttatagttgtttcataaagttttcttcaaatcgccactgataaatgttttaatgggtctgtgaaattgtacaatctgcatgttc |
12891707 |
T |
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| Q |
215 |
agaatttaaaaatacaattttttaaat |
241 |
Q |
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| T |
12891708 |
aaaatttaaaaatacaattttttaaat |
12891734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 5912 - 6138
Alignment:
| Q |
21 |
gtcggcttatgtattatctatgtttcacgatcaaaaggacttttgcactacgcagcatgttagtacta-----cgttaaccatttttgttttcatctatc |
115 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||| || ||||||||||||||||||||||||| | |
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| T |
5912 |
gtcggcttatgtattatccgtgtttcacgatcaaagggacttttgcactaggtagcatgttagtattataatacgttaaccatttttgttttcatctaac |
6011 |
T |
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| Q |
116 |
tgattaagcttttttctgatagttgtttcacaacgttttcttcaaatcgccactgatcaatgattt-attggtctgtgaaattgtacaatctgcatgtta |
214 |
Q |
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| T |
6012 |
cgattaagcttttttcttatagttgtttcataaagttttcttcaaatcgccactgataaatgttttaatgggtctgtgaaattgtacgatctgcatgttc |
6111 |
T |
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| Q |
215 |
agaatttaaaaatacaattttttaaat |
241 |
Q |
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| T |
6112 |
acaatttaaaaatacaattttttaaat |
6138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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