View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_129 (Length: 234)

Name: NF18993_high_129
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_129
NF18993_high_129
[»] chr7 (4 HSPs)
chr7 (12-218)||(1826577-1826783)
chr7 (164-206)||(19914080-19914122)
chr7 (172-206)||(22032905-22032939)
chr7 (164-205)||(991634-991675)
[»] chr5 (6 HSPs)
chr5 (164-205)||(26003132-26003173)
chr5 (164-206)||(15122672-15122714)
chr5 (164-206)||(33667302-33667344)
chr5 (164-206)||(38461189-38461231)
chr5 (172-205)||(29659203-29659236)
chr5 (172-204)||(29418663-29418695)
[»] scaffold1367 (1 HSPs)
scaffold1367 (164-206)||(1193-1235)
[»] chr8 (7 HSPs)
chr8 (164-206)||(11988331-11988373)
chr8 (172-206)||(24866860-24866894)
chr8 (164-206)||(26047034-26047076)
chr8 (164-205)||(14262461-14262502)
chr8 (172-205)||(19925298-19925331)
chr8 (164-205)||(37305290-37305331)
chr8 (164-204)||(35055556-35055596)
[»] chr6 (8 HSPs)
chr6 (164-206)||(4808706-4808748)
chr6 (164-206)||(23239213-23239255)
chr6 (164-207)||(29623386-29623429)
chr6 (164-206)||(3829823-3829865)
chr6 (164-206)||(29052467-29052509)
chr6 (164-206)||(32615324-32615366)
chr6 (164-207)||(2255869-2255913)
chr6 (170-206)||(34800928-34800964)
[»] chr3 (5 HSPs)
chr3 (164-206)||(43971756-43971798)
chr3 (164-206)||(33946620-33946662)
chr3 (164-204)||(3876174-3876214)
chr3 (164-204)||(17752042-17752082)
chr3 (164-204)||(19053362-19053402)
[»] scaffold0299 (1 HSPs)
scaffold0299 (164-205)||(11211-11252)
[»] chr1 (3 HSPs)
chr1 (164-216)||(15235060-15235112)
chr1 (170-207)||(8410274-8410311)
chr1 (164-204)||(13039082-13039122)
[»] chr4 (3 HSPs)
chr4 (164-203)||(18630807-18630846)
chr4 (164-206)||(22117488-22117530)
chr4 (164-206)||(47202960-47203002)
[»] chr2 (2 HSPs)
chr2 (172-205)||(8441601-8441634)
chr2 (172-204)||(12238397-12238429)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 1826783 - 1826577
Alignment:
Q  12 tagcaaagggaataaaacctgttaatttatggatagtcgaaattaaaaagcgaatagccacaacaacagcaaatcgaatgattggaatagaattggaaca 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1826783 tagcaaagagaataaaacctgttaatttatggatagtcgaaattaaaaagcgaatagccacaacaacagcaaatcgaatgattggaatagaattggaaca 1826684  T
Q  112 gcagttattaattgcagcaacagggaaagttaataaataaaaataatacggaataagttatttttcataagctcaaaatcagctcaatccaaacgacccc 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||    
T  1826683 gcagttattaatcgcagcaacagggaaagttaataaataaaaataatacggagtaagttgttttccataagctcaaaatcagctcaatccaaacgagccc 1826584  T
Q  212 ataatca 218  Q
    |||||||    
T  1826583 ataatca 1826577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 19914080 - 19914122
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| |||||||||||| |||||||| |||||||||||||||    
T  19914080 ataagctatttttcataaactcaaaataagctcaatccaaacg 19914122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 22032905 - 22032939
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  22032905 tttttcataagctcaaaataagctcaatccaaacg 22032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 991634 - 991675
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||    
T  991634 ataagctatttttcataagctcaaaataagctcaaaccaaac 991675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 26003132 - 26003173
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  26003132 ataagttatttttcataagctcaaaataagctcaatccaaac 26003173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 15122672 - 15122714
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  15122672 ataagctatttttcataagctcaaaataagctcaaaccaaacg 15122714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 33667344 - 33667302
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  33667344 ataagttatttttcataagctcaaaataagctcataccaaacg 33667302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 38461231 - 38461189
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  38461231 ataagctatttttcataagcttaaaataagctcaatccaaacg 38461189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 29659203 - 29659236
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||||||||||||||| ||||||||||||||    
T  29659203 tttttcataagctcaaaataagctcaatccaaac 29659236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 29418695 - 29418663
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||||||||||||||||| |||||||||||||    
T  29418695 tttttcataagctcaaaataagctcaatccaaa 29418663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 1193 - 1235
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  1193 ataagttatttttcataagcttaaaataagctcaatccaaacg 1235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 11988331 - 11988373
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  11988331 ataagttatttttcataagctcaaaataagctcaaaccaaacg 11988373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 24866894 - 24866860
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  24866894 tttttcataagctcaaaataagctcaatccaaacg 24866860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 26047034 - 26047076
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  26047034 ataagttgttttacataagctcaaaataagctcaatccaaacg 26047076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 14262461 - 14262502
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  14262461 ataagttcttttttataagctcaaaataagctcaatccaaac 14262502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 19925331 - 19925298
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||||||||||||||| ||||||||||||||    
T  19925331 tttttcataagctcaaaataagctcaatccaaac 19925298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 37305290 - 37305331
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||    
T  37305290 ataagttctttttcataagcttaaaataagctcaatccaaac 37305331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 35055556 - 35055596
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||| ||||||||||||||||||||| ||||||| |||||    
T  35055556 ataagctatttttcataagctcaaaataagctcaaaccaaa 35055596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 4808706 - 4808748
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  4808706 ataagctatttttcataagctcaaaatgagctcaatccaaacg 4808748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 23239255 - 23239213
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  23239255 ataagttatttttcataagctcaaaataaactcaatccaaacg 23239213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 29623429 - 29623386
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacga 207  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  29623429 ataagctatttttcataaactcaaaataagctcaatccaaacga 29623386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 3829865 - 3829823
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||    
T  3829865 ataagctatttttcatatgctcaaaataagctcaatccaaacg 3829823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 29052467 - 29052509
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||||||||||||| || ||||||||||||    
T  29052467 ataagctatttttcataagctcaaaataagttcaatccaaacg 29052509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 32615366 - 32615324
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| | ||||| |||||||    
T  32615366 ataagttatttttcataagctcaaaataacctcaacccaaacg 32615324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 2255869 - 2255913
Alignment:
Q  164 ataagttatttttc-ataagctcaaaatcagctcaatccaaacga 207  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||    
T  2255869 ataagttatttttttataagctcaaaataagctcaatccaaacga 2255913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 34800964 - 34800928
Alignment:
Q  170 tatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  34800964 tattttttataagctcaaaataagctcaatccaaacg 34800928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 43971798 - 43971756
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  43971798 ataagttatttttcataagctcaaaataaactcaatccaaacg 43971756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 33946620 - 33946662
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| |||||| |||||||||||||| |||||||||||||||    
T  33946620 ataagctattttgcataagctcaaaataagctcaatccaaacg 33946662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 3876214 - 3876174
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||| ||||||||||||||||||||| || ||||||||||    
T  3876214 ataagctatttttcataagctcaaaataagatcaatccaaa 3876174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 17752082 - 17752042
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||| ||||||||||||||||||||| || ||||||||||    
T  17752082 ataagctatttttcataagctcaaaataagttcaatccaaa 17752042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 19053402 - 19053362
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||| ||||||||||||||||||||| || ||||||||||    
T  19053402 ataagctatttttcataagctcaaaataagttcaatccaaa 19053362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 11252 - 11211
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  11252 ataagttatttttcataagcttaaaataagctcaatccaaac 11211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 15235112 - 15235060
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacgaccccataat 216  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||  |||||||    
T  15235112 ataagctatttttcataagctcaaaataagctcaaaccaaacgaggccataat 15235060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 8410274 - 8410311
Alignment:
Q  170 tatttttcataagctcaaaatcagctcaatccaaacga 207  Q
    ||||||||||||||||||||| || |||||||||||||    
T  8410274 tatttttcataagctcaaaataagttcaatccaaacga 8410311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 13039082 - 13039122
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||| ||||||||||||| ||||||| |||||||||||||    
T  13039082 ataagctatttttcataagttcaaaataagctcaatccaaa 13039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 18630846 - 18630807
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaa 203  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  18630846 ataagctatttttcataagctcaaaataagctcaatccaa 18630807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 22117488 - 22117530
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  22117488 ataagctatttttcataagctcaaaataagctcaaaccaaacg 22117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 47202960 - 47203002
Alignment:
Q  164 ataagttatttttcataagctcaaaatcagctcaatccaaacg 206  Q
    ||||||||||||||||||||||||||| || |||| |||||||    
T  47202960 ataagttatttttcataagctcaaaataagttcaaaccaaacg 47203002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 8441601 - 8441634
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaac 205  Q
    ||||||||||||||||||| ||||||||||||||    
T  8441601 tttttcataagctcaaaataagctcaatccaaac 8441634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 12238429 - 12238397
Alignment:
Q  172 tttttcataagctcaaaatcagctcaatccaaa 204  Q
    ||||||||||||||||||| |||||||||||||    
T  12238429 tttttcataagctcaaaataagctcaatccaaa 12238397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University