View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_138 (Length: 227)
Name: NF18993_high_138
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_138 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9046417 - 9046191
Alignment:
| Q |
1 |
taaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaacaaagccttt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||| ||||||||||||||| |
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| T |
9046417 |
taaaccctgctcaagtgcttaagttactaaatagaaaactaaaactgattgtaataaagtatatcatgtcacatgacgccagcaaagtaacaaagccttt |
9046318 |
T |
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| Q |
101 |
ccaaaattacatacactattagcaaatatcaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaac |
200 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9046317 |
ccaaaattacatacaccgttagcaaataacaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaac |
9046218 |
T |
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| Q |
201 |
cccttttatcataattatcatttgcaa |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9046217 |
cccttttatcataattatcatttgcaa |
9046191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 42938562 - 42938437
Alignment:
| Q |
1 |
taaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaacaaagccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
42938562 |
taaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacataatgctagcaaagtaacaaagccttt |
42938463 |
T |
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| Q |
101 |
ccaaaattacatacactattagcaaa |
126 |
Q |
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| T |
42938462 |
ccaaaattacatacactattagcaaa |
42938437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 42936791 - 42936701
Alignment:
| Q |
134 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42936791 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttg |
42936701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 26084700 - 26084641
Alignment:
| Q |
168 |
gaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaa |
227 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26084700 |
gaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttgcaa |
26084641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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