View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_14 (Length: 522)
Name: NF18993_high_14
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23324977 - 23324784
Alignment:
| Q |
1 |
agtacataaatctgattcgtgtttggttacaccttttgcaattgtgaaatgttgtggagtgagtccgaatattttatctgcattaatttccatcaccaat |
100 |
Q |
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| T |
23324977 |
agtacataaatctgattcgtgtttagttacaccttttgcaattgtgaaatgttgtggagtgagtccgaatattttatctgcattaatttccatcaccaat |
23324878 |
T |
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| Q |
101 |
tgttannnnnnncatgtattttccggaatttcgtcattgaccttccttattaattttggacagtaattgataattaattatcgcattaatttta |
194 |
Q |
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| T |
23324877 |
tgttatttttttcatgtattttccggaatttcgtcattgaccttccttattaattttggacagtaattgataattaattattgcattaatttta |
23324784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 236 - 510
Target Start/End: Complemental strand, 23324788 - 23324530
Alignment:
| Q |
236 |
ttttatcatggattcatttttcccgcagtt---ttactatcatttacaaaaatgcccatagtctctctttttctaaaacaattggtatctattatctata |
332 |
Q |
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| T |
23324788 |
ttttatcatggattcatttttcacgcaattagtttactatcatttacaaaaatgcccatagtctctctttttctaaaacaattggtatctat-------- |
23324697 |
T |
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| Q |
333 |
tcttatcttgttacaaaaaatatttcaattaacacataacaaagacgttaatctttgttgggttgagtgtaactcaactctattactaataaaatatgaa |
432 |
Q |
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| T |
23324696 |
----atcttgctacaaaaaatatttcaa-------ataacaaagacgttaatctttgttgggttgagtgtatctcaactctactactaataaaatatgaa |
23324608 |
T |
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| Q |
433 |
ccatgcctaaacatttttacaagccatatatgaaaacataaaccgcaatcatcgcaactcatctgaatatttcctgat |
510 |
Q |
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| T |
23324607 |
ccatgcctaaacatttttacaagccatatatgaaaacataaaccgcagccatcgcaagtcatccaaatatttcctgat |
23324530 |
T |
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