View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_142 (Length: 222)
Name: NF18993_high_142
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_142 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7175433 - 7175654
Alignment:
| Q |
1 |
caacttctcatcaccacttttctcaccaagtattccactcaaaacatccaacaaattctcattatcttttgatatcataaaaccaacctcttttcctgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175433 |
caacttctcatcaccacttttctcaccaagtattccactcaaaacatccaacaaattctcattatcttttgatatcataaaaccaacctcttttcctgta |
7175532 |
T |
|
| Q |
101 |
ataatttccaacatcaaaataccaaatgcatacacatcaagctttgtagaaacaagaccattttccaaatactcaggagccatgtaacctcttgtcccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175533 |
ataatttccaacatcaaaataccaaatgcatacacatcaagctttgtagaaacaagaccattttccaaatactcaggagccatgtaacctcttgtcccaa |
7175632 |
T |
|
| Q |
201 |
caatatgtcttgtagcaacaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
7175633 |
caatatgtcttgtagcaacaaa |
7175654 |
T |
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