View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_high_146 (Length: 215)
Name: NF18993_high_146
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_146 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4504020 - 4504230
Alignment:
| Q |
1 |
ccaaaaaacaaaatgcaaatgttggagacaattcaactgctacctctgcttcttcatctgcattctggtagctatatattcaaaaaagtgagagagatta |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4504020 |
ccaaaaaaccaaatgcaaatgttggagacaattcaactgctacctctgcttcttcatctgcattctggtagctat----tcaaaaaagtgagagagatta |
4504115 |
T |
|
| Q |
101 |
atcacgagatctgagctagggctaatgttcatgggaccatttttgttggaacataatgtattgtcatgtgtatgttagttacccttatggccccacaaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4504116 |
atcacgagatctgagctagggcttatgttcatgggaccatttttgttggaccataatgtattgtcatgtgtatgttagttacccttatggccccataaca |
4504215 |
T |
|
| Q |
201 |
caagcagttaattgg |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4504216 |
caagcagttaattgg |
4504230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University