View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_147 (Length: 215)

Name: NF18993_high_147

Description: NF18993

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18993_high_147

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 185; E-Value: 1e-100

Query Start/End: Original strand, 15 - 199

Target Start/End: Original strand, 49446130 - 49446314

Alignment:

Q	15	tgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaat	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446130	tgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaat	49446229	T

Q	115	gctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatcaatggtctcaactccgctttgtacaacatggttg	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446230	gctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatcaatggtctcaactccgctttgtacaacatggttg	49446314	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 21 - 129

Target Start/End: Original strand, 17642084 - 17642192

Alignment:

Q	21	gaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaat	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	17642084	gaaggattttgagggagaggagtctaaagaaagaaaaccccttcacagcgaacccataaaactcgagaacaacaagagtcctgcaggttagaatgctaac	17642183	T

Q	121	aggcaattt	129	Q
		\| \|\|\|\|\|\|\|
T	17642184	aagcaattt	17642192	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]