View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_high_15 (Length: 514)
Name: NF18993_high_15
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 22878873 - 22879353
Alignment:
| Q |
17 |
atgaattggaacacattattaatcaccatgatagcatagcactactaagtacaaagcaaacacatataagttgtatgcagcgatcaattgtgtgcttgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22878873 |
atgaattggaacacattattaatcaccatgatagcatagcactactaagtactaagcaaacacatataagttgtatgcagcgatcaattgtgtgcttgtg |
22878972 |
T |
|
| Q |
117 |
aaatgaaatgtctagagattcaactattccatgtcagccttggctctttttgactcaacattccataatgatactaatctcataagtgattaactaaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22878973 |
aaatgaaatgtctagagattcaactattccatgtcagccttggctctttttgactcaacattccataatgatactaatctcataagtgattaactaaaac |
22879072 |
T |
|
| Q |
217 |
ctaaccgtcnnnnnnnattctttcaacaatgataaatatataatgagaggatgatatttcagttcaagacagagaaaatcttaaagaacaagaaacactt |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22879073 |
ctaaccgtctttttttattctttcaacaatgataaatatataatgagaggatgatatttcagttcaagacagagaaaatcttaaagaacaagaaacactt |
22879172 |
T |
|
| Q |
317 |
acaaactttaaaggtattatcagcagagctcgaattcgagacctacaaggttaagatcggtttttatagcactagaccaaacttttgttaaagtataacc |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22879173 |
acaaactttaaaggtattattagcagagctcgaattcgagacctacaaggttaagatcggtttttatagcactagaccaaacttttgttaaagtataacc |
22879272 |
T |
|
| Q |
417 |
gtcttattattgagaagattgagttgacccctgctcacacaatagtttcaatgccataataattcaattctagatttcatt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22879273 |
gtcttattattgagaagattgagttgacccctgctcacacaatagtttcaatgccataataattcaattctagatttcatt |
22879353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University