View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_17 (Length: 491)
Name: NF18993_high_17
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 43055414 - 43054940
Alignment:
| Q |
8 |
cgaagaatatcaatggatagcaacactcccaaacctcacct---------atagaaattttgtaaacatccatatgggaatatagagaaacgcgtcaaga |
98 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43055414 |
cgaacaatatcaatggatagcaacactcccaaacctcaccttcatcacctatagaaattttgtaaacatccatatgggaatataaagaaacgcgtcaaga |
43055315 |
T |
|
| Q |
99 |
gcgatgcacaaagcctatcattgttctaaaagaacttctactaaaatcgaaaaggacatatatttcgtataaagaaaacatatcaacaagtagtatcatt |
198 |
Q |
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| T |
43055314 |
gcgatgcacaaagcctatcattgttctaaaagaacttctactaaaatcgaaaaggacatatatttcgtataaagaaaacatatcaacaagtagtatcatt |
43055215 |
T |
|
| Q |
199 |
tcaattactctttggattgtccaaactaaagaatatatactctcagtactctagtataataatataacttcnnnnnnngtataagcacctatgaagagca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43055214 |
tcaattactctttggattgtccaaactaaagaatatatactctcagtactctagtataataatataacttcaaaaaaagtataagcacctatgaagagca |
43055115 |
T |
|
| Q |
299 |
caatccttgcaattgttgcaaaaaacccggacctctggaaaacctatatcgccgcaagtgagacaaacaactttttcctgcaacagaaaacataaacatt |
398 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055114 |
caatccttgcaattgttgcaaaaaaccctgacctctggaaaacctatatcgccgcaagtgagacaaacaactttttcctgcaacagaaaacataaacatt |
43055015 |
T |
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| Q |
399 |
gaacatgatcagcagtatacatttatacagaagtcataaacataactgaaactgggtaattttctagggactaaa |
473 |
Q |
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| T |
43055014 |
gaacatgatcagcagtatacatttatacagaagtcataaacataaccgaaactgggtaattttctagggactaaa |
43054940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 14525075 - 14524979
Alignment:
| Q |
14 |
atatcaatggatagcaacactcccaaacctcacctatagaaattttgtaaacatccatatgggaatatagagaaacgcgtcaagagcgatgcacaaag |
111 |
Q |
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| T |
14525075 |
atatcaatggataacaacactcctaaatctcacct-tagaaattttgtaaacatccatatgggaatataaagaaatgcatctagagcaatgctcaaag |
14524979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 43186018 - 43186084
Alignment:
| Q |
285 |
acctatgaagagcacaatccttgcaattgttgcaaaaaacc-cggacctctggaaaacctatatcgc |
350 |
Q |
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| T |
43186018 |
acctgtgaagagcacaagcctggcacttgttgcaaaaaacctctaacctctggaaaacctacatcgc |
43186084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 14524966 - 14524909
Alignment:
| Q |
178 |
atatcaacaagtagtatcatttcaattactctttggattgtccaaactaaagaatata |
235 |
Q |
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| T |
14524966 |
atatcaacaagtagtatcattctggttgctctttagattgtccaaacttaagaatata |
14524909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 44804708 - 44804643
Alignment:
| Q |
185 |
caagtagtatcatttcaattactctttggattgtccaaactaaagaatatatactctcagtactcta |
251 |
Q |
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| T |
44804708 |
caagtagtatcattccaattactctttggatcgttcaacct-aagactatacactctcagtactcta |
44804643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 44804469 - 44804432
Alignment:
| Q |
330 |
cctctggaaaacctatatcgccgcaagtgagacaaaca |
367 |
Q |
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| T |
44804469 |
cctctggaaaacctacatcaccgcaagtgagacaaaca |
44804432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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