View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_2 (Length: 679)

Name: NF18993_high_2
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_2
NF18993_high_2
[»] chr5 (1 HSPs)
chr5 (1-661)||(15806502-15807162)
[»] chr8 (2 HSPs)
chr8 (1-414)||(3387029-3387440)
chr8 (450-636)||(3387651-3387836)


Alignment Details
Target: chr5 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 15807162 - 15806502
Alignment:
Q  1 aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807162 aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg 15807063  T
Q  101 gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattcaaggaggtgctgatttcattttggtatagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807062 gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattcaaggaggtgctgatttcattttggtatagtg 15806963  T
Q  201 ctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagttttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15806962 ctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagttttt 15806863  T
Q  301 gatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctccttaagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15806862 gatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctccttaagt 15806763  T
Q  401 aattgaatttgtttctttgaagattttagtgaactaagtaagacccaaaacttgtttctcagatagttcatcaaccctacctccgattttgaataataaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15806762 aattgaatttgtttctttgaagattttagtgaactaagtaagacccaaaacttgtttctcagatagttcatcaaccctatctccgattttgaataataaa 15806663  T
Q  501 tgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaaggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15806662 tgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaaggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattg 15806563  T
Q  601 attccctctcgacttgagtagcttctgctcggtttgcatctctgcagcttgttatactttt 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15806562 attccctctcgacttgagtagcttctgctcggtttgcatctctgcagcttgttatactttt 15806502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 3387029 - 3387440
Alignment:
Q  1 aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||| |||||||||| ||||    
T  3387029 aaatacaaccacaatacataaagtttccgatttaacttcaatattgagatagaaaactatcattcccaattacata----caaccaagagaagaattatg 3387124  T
Q  101 gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattca---aggaggtgctgatttcattttggtata 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  3387125 gtaatcatagttatataccatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaaggaggtgctgatttcattttggtata 3387224  T
Q  198 gtgctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagtt 297  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||||||| ||   ||||||||||||||||  ||||||| ||| ||||||  |    
T  3387225 gtgctcttggagtctcttacaattaaaattgaatttttgttctttcttttcaaggtgaattgttttctcaaggatttccaaagtatcggaagataga-ct 3387323  T
Q  298 tttgatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctcctta 397  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| ||||||||  ||||||||||||||||||||| |    
T  3387324 tttgatttctttcagaatttcgaccatttttttttgacattttgaataagtatctttcaagagagatttttcttggagaagcttatttacttgctcctca 3387423  T
Q  398 agtaattgaatttgttt 414  Q
    |||||||||||||||||    
T  3387424 agtaattgaatttgttt 3387440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 3387651 - 3387836
Alignment:
Q  450 acttgtttctcagatagttcatcaaccctacctccgattttgaataataaatgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaa 549  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  3387651 acttgtttctcagacagttcatcaatcctatctccgattttgaataataaacgttttaacttttctctacggtttgtgtgatttggaagatatttcaaaa 3387750  T
Q  550 ggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattgattccctctcgacttgagtagcttctgctcggtttg 636  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||    
T  3387751 ggttacttgaaaaaactatatgtctcaagtcatcaagcagtg-attgattgattccctctcaacttgagtagcttctgatcggtttg 3387836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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