View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_high_22 (Length: 460)
Name: NF18993_high_22
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 38927174 - 38926729
Alignment:
| Q |
1 |
ttttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgttgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927174 |
ttttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgttgagg |
38927075 |
T |
|
| Q |
101 |
atgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactctccatgttcacttaggactatggtatcaaattctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927074 |
atgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactctccatgttcacttaggactatggtatcaaattctga |
38926975 |
T |
|
| Q |
201 |
tgggttggagaatttgatgaaggtgataagaaaaatgaagccgtttattatgatagtacttgaactggaagcaaaccataattcacctttgtttgcgaat |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38926974 |
tggcttggagaatttgatgaaggtgataagaaaaatgaaaccgtttattatgatagtacttgaacttgaagcaaaccataattcacctttgtttgcgaat |
38926875 |
T |
|
| Q |
301 |
aggtttgttgaagcattgttcttttactcagcattttttgactgtgttgatacttgtataaaagaggattatgagtgtagagtaatgatggaagcaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38926874 |
aggtttgttgaagcattgttcttttactcagcattttttgactgtgttgatacttgtataaaagaggattatgagtgtagagtaatgatggaagcaatat |
38926775 |
T |
|
| Q |
401 |
tatctgaagggataagaaacattgttggtttggaagatgaagaaag |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38926774 |
tatctgaagggataagaaacattgttggtttggaagatgaagaaag |
38926729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 44837674 - 44837613
Alignment:
| Q |
22 |
gaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataa |
83 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
44837674 |
gaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataa |
44837613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University