View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_23 (Length: 458)

Name: NF18993_high_23
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_23
NF18993_high_23
[»] chr4 (11 HSPs)
chr4 (13-440)||(8673613-8674044)
chr4 (56-146)||(31939878-31939969)
chr4 (58-146)||(13770323-13770412)
chr4 (89-146)||(32823184-32823241)
chr4 (69-146)||(46722780-46722857)
chr4 (8-55)||(8696931-8696978)
chr4 (103-146)||(24783005-24783048)
chr4 (59-147)||(19032447-19032535)
chr4 (8-55)||(8677702-8677749)
chr4 (105-146)||(21734378-21734419)
chr4 (195-235)||(30226030-30226070)
[»] scaffold0049 (1 HSPs)
scaffold0049 (58-146)||(15622-15711)
[»] chr6 (4 HSPs)
chr6 (56-147)||(7640267-7640358)
chr6 (60-146)||(30383661-30383748)
chr6 (61-146)||(582722-582809)
chr6 (61-146)||(3886708-3886795)
[»] chr1 (5 HSPs)
chr1 (56-146)||(33409450-33409540)
chr1 (89-146)||(48777525-48777582)
chr1 (69-145)||(7494009-7494085)
chr1 (105-146)||(29681752-29681793)
chr1 (105-146)||(48366052-48366093)
[»] chr7 (8 HSPs)
chr7 (58-146)||(304009-304098)
chr7 (56-145)||(45809357-45809448)
chr7 (58-146)||(2830019-2830108)
chr7 (56-143)||(7527881-7527971)
chr7 (58-147)||(33335205-33335295)
chr7 (66-144)||(5481064-5481140)
chr7 (66-146)||(11469394-11469472)
chr7 (105-146)||(31174039-31174080)
[»] chr2 (8 HSPs)
chr2 (58-146)||(5380797-5380886)
chr2 (68-147)||(25280671-25280750)
chr2 (58-142)||(10413240-10413325)
chr2 (69-146)||(10586003-10586080)
chr2 (56-146)||(12563394-12563484)
chr2 (56-147)||(19590356-19590448)
chr2 (61-146)||(1592494-1592581)
chr2 (61-146)||(36313976-36314063)
[»] chr5 (4 HSPs)
chr5 (58-146)||(17172678-17172766)
chr5 (69-146)||(39684545-39684622)
chr5 (58-146)||(8403987-8404075)
chr5 (105-146)||(21361484-21361525)
[»] chr3 (4 HSPs)
chr3 (56-144)||(40286025-40286113)
chr3 (58-146)||(35733868-35733957)
chr3 (69-146)||(30343567-30343644)
chr3 (195-235)||(52725274-52725314)
[»] chr8 (2 HSPs)
chr8 (56-146)||(18606581-18606674)
chr8 (56-146)||(2812583-2812675)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 440
Target Start/End: Original strand, 8673613 - 8674044
Alignment:
Q  13 aatattacttcacacaccacttcactcaaataaggaaaacaagtgttattg------------ccgcattttttgtataatccatttttgttgaatcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||  || |||||||||||||    
T  8673613 aatattacttcacacaccacttcactcaaataaggaaaacaagtgttattgacgcattttttgccgcattttttgtataatcagttcttgttgaatcaag 8673712  T
Q  101 tgtatattttatgaacaacattttatataagtaatagttattgtgagnnnnnnnngcttgccatattagattagtttnnnnnnnnnnnnnntctttatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||||| | ||||||||||||              |||||||||    
T  8673713 tgtatattttatgaacaacattttatataagtaatagttattgtgagtttttttttcttgccttgttagattagtttaaaaaaaaaa----tctttatat 8673808  T
Q  201 gtagtcatctcataaaaatattgctaacttcgccgttgtcggtatcgcatcaagttaaacaattttctttatgaatatagtgtctttttaataaatgaat 300  Q
    ||||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  8673809 gtagtcacctcataaaaatat----aacttcgccgttgtcggtatcgcatcaagttaaacaattttctttatgaatctagtgtctttttaataaatgtat 8673904  T
Q  301 atgttataaatacaaagtatctaccacatttagtgagatgaacttttctctccaatcgaattttcttcataagcaacaactaactctcaagtccctcacc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  8673905 atgttataaatacaaagtatctaccacatttagtgagatgaacttttctctccaatcgaattttctccataagcaacaactaactctcaagtccatcacc 8674004  T
Q  401 attcgtacgtaccagacaaatcaacacatgttgaatatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8674005 attcgtacgtaccagacaaatcaacacatgttgaatatgc 8674044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 31939969 - 31939878
Alignment:
Q  56 tgttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||| ||||||||||||||| |||||||  || | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  31939969 tgttgttgccgcattttttggtataatctgttctcgttgaatcaagtgtatattttatgaagaacattttatataagtaataattattgtga 31939878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 13770323 - 13770412
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  ||||| |||||||| || |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  13770323 ttattgccgcagcttttggtataatccgttcttgttgaatcaaatatatattttatgaagaacattttatataagtaatagttattgtga 13770412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 32823241 - 32823184
Alignment:
Q  89 tgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32823241 tgttaaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 32823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 46722780 - 46722857
Alignment:
Q  69 ttttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||| ||||||||| ||  |||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  46722780 tttttggtataatccgttcatgttgaatcaagtggatattttatgaagaacattttatataagtaataattattgtga 46722857  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8696978 - 8696931
Alignment:
Q  8 ccaagaatattacttcacacaccacttcactcaaataaggaaaacaag 55  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  8696978 ccaacaatattacttcacacaccacttcactcaaataagaaaaacaag 8696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 24783048 - 24783005
Alignment:
Q  103 tatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  24783048 tatattttatgaagaacattttatataagtaatagttattgtga 24783005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 19032535 - 19032447
Alignment:
Q  59 tattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtgag 147  Q
    |||| ||| |||||| ||||||||  || || || ||||||||||||||||||| || ||||||||||||||||| ||  |||||||||    
T  19032535 tattaccgtatttttggtataatctgttcttatttaatcaagtgtatattttataaagaacattttatataagtagtaagtattgtgag 19032447  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8677702 - 8677749
Alignment:
Q  8 ccaagaatattacttcacacaccacttcactcaaataaggaaaacaag 55  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  8677702 ccaacaatattacttcatacaccacttcactcaaataagaaaaacaag 8677749  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 21734378 - 21734419
Alignment:
Q  105 tattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  21734378 tattttatgaagtacattttatataagtaatagttgttgtga 21734419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 30226070 - 30226030
Alignment:
Q  195 ttatatgtagtcatctcataaaaatattgctaacttcgccg 235  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  30226070 ttatatgtagccacctcataaaaatattgctagcttcgccg 30226030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 15622 - 15711
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15622 ttattgccgcattttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 15711  T

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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 7640267 - 7640358
Alignment:
Q  56 tgttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtgag 147  Q
    |||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  7640267 tgttattgccccattttttgtataattcgttcttgtttaatcaagtgtatattttatgaagaacattttatataagtaatatttattgtgag 7640358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 30383748 - 30383661
Alignment:
Q  60 attgccgcatttttt-gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30383748 attgccgcatttttttgtatactccgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 30383661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 582809 - 582722
Alignment:
Q  61 ttgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||  ||||||||| ||  || |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  582809 ttgccgcatttttttagtataatccgttcatgctgaatcaagtgtatattttatgaagaacattttatataggtaatagttatcgtga 582722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 3886708 - 3886795
Alignment:
Q  61 ttgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||  ||||||||| ||  || |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  3886708 ttgccgcatttttttggtataatccgttcatgctgaatcaagtgtatattttatgaagaacattttatataggtaatagttatcgtga 3886795  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 33409540 - 33409450
Alignment:
Q  56 tgttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||||||   ||||| | || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33409540 tgttattgccgcatttttaacataattcgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 33409450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 48777525 - 48777582
Alignment:
Q  89 tgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48777525 tgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 48777582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 7494009 - 7494085
Alignment:
Q  69 ttttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtg 145  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  7494009 tttttggtataatccgttcatgttgaatcaagtgtatattttatgaagaatattttatataagtaatagttattgtg 7494085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 29681752 - 29681793
Alignment:
Q  105 tattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  29681752 tattttatgaagtacattttatataagtaatatttattgtga 29681793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 48366093 - 48366052
Alignment:
Q  105 tattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  48366093 tattttatgaagtacattttatataagtaatatttattgtga 48366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 304098 - 304009
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  304098 ttattgccgtattttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacgttttatataagtaatagttattgtga 304009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 45809448 - 45809357
Alignment:
Q  56 tgttattgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtg 145  Q
    |||| ||||||||||||||  ||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45809448 tgttgttgccgcatttttttggtataatccgttcatgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtg 45809357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 2830019 - 2830108
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  2830019 ttattgccgtattttttggtataatccgttcttgtagaatcaagtgtatattttatgaagaacgttttatataagtaatatttattgtga 2830108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 7527881 - 7527971
Alignment:
Q  56 tgttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatat--aagtaatagttattg 143  Q
    ||||||||||| |||||||| ||||||   || ||||||||||||||||||| |||||||| ||||||||||||  |||||||||||||||    
T  7527881 tgttattgccgtattttttggtataatatgttcttgttgaatcaagtgtataatttatgaagaacattttatataaaagtaatagttattg 7527971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 33335295 - 33335205
Alignment:
Q  58 ttattgccgcattttttgtataatccatttttgttgaatcaagt--gtatattttatgaacaacattttatataagtaatagttattgtgag 147  Q
    |||||||||||||||| ||| ||| | || ||||| ||||||||  ||||||||||| |  || ||||||||||||||||||||||||||||    
T  33335295 ttattgccgcatttttggtacaattcgttcttgtttaatcaagtatgtatattttattag-aatattttatataagtaatagttattgtgag 33335205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 5481064 - 5481140
Alignment:
Q  66 gcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgt 144  Q
    |||||||| ||||||||| ||||| |||  | ||||||||  ||||||||  ||||||||||||||||||| |||||||    
T  5481064 gcatttttggtataatccttttttattgctttaagtgtat--tttatgaagtacattttatataagtaatatttattgt 5481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 11469394 - 11469472
Alignment:
Q  66 gcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||| ||||||||| ||||| |||  | ||||||||  ||||||||  |||||||||||| |||||| |||||||||    
T  11469394 gcatttttggtataatccttttttattgttttaagtgtat--tttatgaagtacattttatatacgtaatatttattgtga 11469472  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 31174080 - 31174039
Alignment:
Q  105 tattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  31174080 tattttatgaagtacattttatataagtaatagttgttgtga 31174039  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 5380886 - 5380797
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  5380886 ttattgccgcattttttggtataatccgtacttgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttaatgtga 5380797  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 25280671 - 25280750
Alignment:
Q  68 attttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtgag 147  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  25280671 atttttggtttaatccgtttttgttgaatcaagtgtatattttatgaagaacattttatataagtaataattattgtgag 25280750  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 10413240 - 10413325
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttatt 142  Q
    |||||||||||||||||| |||||||  || |||||||||||| |||||||||||| || |||||||||||||||||||| |||||    
T  10413240 ttattgccgcattttttggtataatctgttcttgttgaatcaaatgtatattttattaagaacattttatataagtaataattatt 10413325  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 10586003 - 10586080
Alignment:
Q  69 ttttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||| ||||||||| ||  |||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  10586003 tttttggtataatccgttcatgttgaatcaagtggatattttatgaagaacattttatataagtaataattattgtga 10586080  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 12563484 - 12563394
Alignment:
Q  56 tgttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||| | |||||| ||||||| | || ||||||||||| ||| | |||||||||| ||||||| ||||||||||||||||||||||    
T  12563484 tgttattgcggtatttttcgtataattcgttcttgttgaatcaggtgaacattttatgaataacatttaatataagtaatagttattgtga 12563394  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 19590448 - 19590356
Alignment:
Q  56 tgttattgccgcattttttgtataatccatttttgttgaatcaagt--gtatattttatgaacaacattttatataagtaatagttattgtgag 147  Q
    ||||||||| |||||||| |||||||||||| ||||| ||||||||  |||||||||||| | || ||||||||||||||||| ||||||||||    
T  19590448 tgttattgctgcatttttggtataatccattattgtttaatcaagtacgtatattttatg-agaatattttatataagtaatacttattgtgag 19590356  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 1592581 - 1592494
Alignment:
Q  61 ttgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||  ||||||||| ||  || |||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  1592581 ttgccgcatttttttggtataatccgttcatgctgaatcaaatgtatattttatgaagaacattttatataggtaatagttatcgtga 1592494  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 36314063 - 36313976
Alignment:
Q  61 ttgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||||||||||  ||||||||| ||  || |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||    
T  36314063 ttgccgcatttttttggtataatccgttcatgctgaatcaagtgtatatttgatgaagaacattttatataggtaatagttatggtga 36313976  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 17172678 - 17172766
Alignment:
Q  58 ttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||||||| ||||||| | || ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17172678 ttattgccgcatttttagtataattcgttcttgttggttcaagtgtatattttatgaagaacattttatataagtaatagttattgtga 17172766  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 39684622 - 39684545
Alignment:
Q  69 ttttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  39684622 tttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaataattattgtga 39684545  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 8403987 - 8404075
Alignment:
Q  58 ttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||||| ||||||||||||||||   ||  |||| |||||||||||| ||||||||| | | |||||||||||||| || ||||||||    
T  8403987 ttattgctgcattttttgtataatttgttcctgtttaatcaagtgtatgttttatgaagatcgttttatataagtaacaggtattgtga 8404075  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 21361484 - 21361525
Alignment:
Q  105 tattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  21361484 tattttatgaagtacattttatataagtaatatttattgtga 21361525  T

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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 40286025 - 40286113
Alignment:
Q  56 tgttattgccgcattttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgt 144  Q
    ||||||||| |||||||| ||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  40286025 tgttattgctgcatttttagtataatccgttcttgttgaatcaagtgtatattttgtgaagaacattttatataagtaataattattgt 40286113  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 35733957 - 35733868
Alignment:
Q  58 ttattgccgcattttttg-tataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||||||||||||||||| ||||| || || |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  35733957 ttattgccgcattttttggtataacccgttcttgttgaatcaagtgtatattttatgaagaatattttatataattaatagttattgtga 35733868  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 30343567 - 30343644
Alignment:
Q  69 ttttttgtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    ||||| ||||||||| ||  |||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  30343567 tttttggtataatccgttcatgttgaatcaagtggatattttatgaagaacattttatataagtaataattattgtga 30343644  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 52725274 - 52725314
Alignment:
Q  195 ttatatgtagtcatctcataaaaatattgctaacttcgccg 235  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  52725274 ttatatgtagccacctcataaaaatattgctagcttcgccg 52725314  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 18606581 - 18606674
Alignment:
Q  56 tgttattgccgcatttttt---gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||| ||||||||||||||   ||||||||| ||  || |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  18606581 tgttgttgccgcattttttttggtataatccgttcatgctgaatcaagtgtatattttatgaagaacattttatataggtaatagttatcgtga 18606674  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 2812583 - 2812675
Alignment:
Q  56 tgttattgccgcatttttt--gtataatccatttttgttgaatcaagtgtatattttatgaacaacattttatataagtaatagttattgtga 146  Q
    |||| ||||||||||||||  ||||||||| ||  |||| | |||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  2812583 tgttgttgccgcatttttttggtataatccgttcatgtttagtcaagtttatattttatgaagaacattttatataagtcatagttattgtga 2812675  T

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