View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_27 (Length: 439)
Name: NF18993_high_27
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 45024747 - 45024619
Alignment:
| Q |
20 |
aaagatgttcacacttgatatcaacaaacatatctcaaataaaattacctctaacagaggaaaagctatctaaaataaagactgcaattaatagagtaat |
119 |
Q |
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| T |
45024747 |
aaagatgttcacacttgatatcaacaaacatatctcaaataaaattacctctaacagaggaaaaattatctaaaataaagaccgcaattaatagagtaat |
45024648 |
T |
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| Q |
120 |
gtaatatagtaaataaatgttaacatttt |
148 |
Q |
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| T |
45024647 |
gtaatataataaataaacgttaacatttt |
45024619 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 45024206 - 45024152
Alignment:
| Q |
216 |
aattctacatatgagttttcgttaatatttcgtttaagcgcacactctcttataa |
270 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
45024206 |
aattatacatatgagttttcgttaatatttcgtttaagcacacactcttttataa |
45024152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 54443011 - 54442886
Alignment:
| Q |
271 |
gagcaatgttagttgcaggctttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatannnnnnnataccttacctgatgaccg |
370 |
Q |
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| T |
54443011 |
gagcaatgctagctgcatgcgttttaacacttgcgattgaacacacccatttgtagcatgccacgttacctatatttttttataacttacctgctgaccg |
54442912 |
T |
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| Q |
371 |
gttctacacttctacttgttaaaaca |
396 |
Q |
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| T |
54442911 |
gttctacacttctacttgttaaaaca |
54442886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 13747384 - 13747259
Alignment:
| Q |
271 |
gagcaatgttagttgcaggctttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatannnnnnnataccttacctgatgaccg |
370 |
Q |
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|||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||| |
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| T |
13747384 |
gagcaatgctagctgcatgcgttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatatttttttataacttgcctgctgaccg |
13747285 |
T |
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| Q |
371 |
gttctacacttctacttgttaaaaca |
396 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13747284 |
gttctacacttctacttgttaaaaca |
13747259 |
T |
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