View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_33 (Length: 431)
Name: NF18993_high_33
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 2391287 - 2391687
Alignment:
| Q |
10 |
aagaatatatgtgatcaata-ctaagcggcaaaggatttatggtatgtgttaaatttgaattgaatggtttggactttcaaca-----tgtggaatttaa |
103 |
Q |
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| T |
2391287 |
aagaaaatatgtgatcaataactaagcggcaaaggatttatggtatgcgttaaatttgaattgaatggtttggactttcaacgcatattgtggaatttaa |
2391386 |
T |
|
| Q |
104 |
tatgaaaattgttactttggtcnnnnnnntaatatgaacatgtgactcagcaagcaagcaataccagaataaacgacccagttggcaattcagagttata |
203 |
Q |
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| T |
2391387 |
tatgaaaattgttactttggtcaaaaaaataatatgaacatgtgactcagcaagcaagcaataccagaataaacgacccagttgacaattcagagttata |
2391486 |
T |
|
| Q |
204 |
tgttctttcaaacccttcaaacggttaaaagttagacaaatgagtctaatatacttcaaaccttaataaagctttaaatggaggaagacttggtagattt |
303 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391487 |
tgttctttca---------aacggttaaaagttagacaaatgagtctaatatacttcaaaccttaataaagctttaaatggaggaagacttggtagattt |
2391577 |
T |
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| Q |
304 |
tggacctttcatttcaggtcaacaaggcctgctactactgttgtgctgagactgggagagagacaatagatagataagataatctgcaaaccgttagtta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
2391578 |
tggacctttcatttcaggtcaacaaggcctgctactactgttgtgctgagactgggagagagacagtggatagataagataatctgcaaaccgttagtta |
2391677 |
T |
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| Q |
404 |
ggggtcatac |
413 |
Q |
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| T |
2391678 |
ggggtcatac |
2391687 |
T |
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