View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_41 (Length: 395)

Name: NF18993_high_41
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_41
NF18993_high_41
[»] chr4 (5 HSPs)
chr4 (1-250)||(2243799-2244033)
chr4 (243-302)||(2243724-2243783)
chr4 (323-372)||(2243682-2243731)
chr4 (12-90)||(20108906-20108983)
chr4 (50-90)||(39603594-39603634)
[»] chr1 (6 HSPs)
chr1 (43-91)||(41505553-41505601)
chr1 (43-88)||(11941196-11941241)
chr1 (50-87)||(24562466-24562503)
chr1 (49-90)||(34795566-34795607)
chr1 (49-90)||(45661257-45661298)
chr1 (43-88)||(51190726-51190771)
[»] chr5 (6 HSPs)
chr5 (14-86)||(32021968-32022043)
chr5 (44-87)||(42500366-42500409)
chr5 (43-85)||(7319167-7319209)
chr5 (49-86)||(24030564-24030601)
chr5 (43-83)||(19460532-19460572)
chr5 (53-93)||(37954577-37954617)
[»] scaffold0018 (1 HSPs)
scaffold0018 (47-90)||(157974-158017)
[»] chr2 (3 HSPs)
chr2 (43-90)||(15757822-15757869)
chr2 (52-90)||(1633711-1633749)
chr2 (43-88)||(41407170-41407215)
[»] chr3 (7 HSPs)
chr3 (43-85)||(2719341-2719383)
chr3 (12-89)||(10704669-10704745)
chr3 (45-88)||(42747909-42747952)
chr3 (47-88)||(849551-849592)
chr3 (47-88)||(3846041-3846082)
chr3 (49-86)||(30956788-30956825)
chr3 (49-86)||(30972600-30972637)
[»] chr8 (3 HSPs)
chr8 (43-88)||(40980999-40981044)
chr8 (43-90)||(1058230-1058277)
chr8 (50-90)||(35534772-35534812)
[»] chr6 (2 HSPs)
chr6 (43-88)||(24626164-24626209)
chr6 (49-90)||(6538384-6538425)
[»] chr7 (4 HSPs)
chr7 (47-90)||(9210495-9210538)
chr7 (43-86)||(18865206-18865249)
chr7 (47-90)||(33128624-33128667)
chr7 (49-88)||(46280421-46280460)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2244033 - 2243799
Alignment:
Q  1 aacgtaatattattttatcttttctataaaactagcttatgaaagcgtttgtgctataagctgtaaataatctgtttatccaaacaggcctatctttatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2244033 aacgtaatattattttatcttttctataaaactagcttatgaaagtgtttgtgctataagctgtaaataatctgtttatccaaacaggcctatctttgtc 2243934  T
Q  101 ttccacaaattaatagtaggttaattgaaagtaaaagcagtgtaattatttgaataagaaacataaaaatcagtatcagcatttagtaaatagattaatt 200  Q
    |||||||||||               ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2243933 ttccacaaatt---------------gaaagtaaaagcagtgtaaatttttgaataagaaacataaaaatcagtatcggcatttagtaaatagattaatt 2243849  T
Q  201 tgttaacctaatacatataactttgatactacaagaaaacgtataatcaa 250  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2243848 tgttaacctaatacatataactttgatactacaagaaaaagtataatcaa 2243799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 2243783 - 2243724
Alignment:
Q  243 ataatcaagatcattgaaaagcaaaaagaatgaagtttggggattcttacatgttgaatg 302  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2243783 ataatcaaaatcattgaaaagcaaaaagaatgaagtttggggattcttacatgttgaatg 2243724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 2243731 - 2243682
Alignment:
Q  323 gttgagtgagtttgagagaacgagaggaaagttgagaacggttttttgag 372  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  2243731 gttgaatgaggttgagagaacgagaggaaagttgagaacggttctttgag 2243682  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 20108983 - 20108906
Alignment:
Q  12 attttatcttttc-tataaaactagcttatgaaagcgtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||||||||||| | ||||||||||||||| |||| |  ||||||||||||| ||| ||  |||||||||||| |||||    
T  20108983 attttatcttttcctctaaaactagcttatgcaagcct--gtgctataagctgcaaaaaagttgtttatccaaataggcc 20108906  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 39603594 - 39603634
Alignment:
Q  50 tgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    |||||||||||||| |||||| ||||||||||||| |||||    
T  39603594 tgtgctataagctgcaaataagctgtttatccaaataggcc 39603634  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 41505601 - 41505553
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacaggcct 91  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  41505601 aagcgtttgtgctataagctgcaaataagctgtttatccaaacaggcct 41505553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 11941241 - 11941196
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||    
T  11941241 aagcgtttgtgctataagctataaatgagctgtttatccaaacagg 11941196  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 24562466 - 24562503
Alignment:
Q  50 tgtgctataagctgtaaataatctgtttatccaaacag 87  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  24562466 tgtgctataagctgcaaataagctgtttatccaaacag 24562503  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 34795566 - 34795607
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    |||||||||||| || |||||| |||||||||||||||||||    
T  34795566 ttgtgctataagatgcaaataagctgtttatccaaacaggcc 34795607  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 45661257 - 45661298
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||    
T  45661257 ttgtgctctaagctgcaaataatctgtttatcccaacaggcc 45661298  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 51190771 - 51190726
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||||    
T  51190771 aagcgtttgtgctataagctacaaataagttgtttatccaaacagg 51190726  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32022043 - 32021968
Alignment:
Q  14 tttatctttt-ctataaaactagcttatgaa--agcgtttgtgctataagctgtaaataatctgtttatccaaaca 86  Q
    |||||||||| |||||||||||||||||| |  |||| ||||||||||| ||| ||||||||| ||||||||||||    
T  32022043 tttatcttttgctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 32021968  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 42500366 - 42500409
Alignment:
Q  44 agcgtttgtgctataagctgtaaataatctgtttatccaaacag 87  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||    
T  42500366 agcgcttgtgctataagctggaaataagctgtttatccaaacag 42500409  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 7319167 - 7319209
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaac 85  Q
    ||||| |||||||||||||||||||||| |||||||| |||||    
T  7319167 aagcgcttgtgctataagctgtaaataagctgtttattcaaac 7319209  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 24030564 - 24030601
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaaca 86  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  24030564 ttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 19460532 - 19460572
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaa 83  Q
    |||| |||||||||||||||| |||||| ||||||||||||    
T  19460532 aagcatttgtgctataagctgcaaataagctgtttatccaa 19460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 37954617 - 37954577
Alignment:
Q  53 gctataagctgtaaataatctgtttatccaaacaggcctat 93  Q
    ||||||||||| |||||| || |||||||||||||||||||    
T  37954617 gctataagctgcaaataagctatttatccaaacaggcctat 37954577  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 158017 - 157974
Alignment:
Q  47 gtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  158017 gtttgtgctataagctgcaaataagctgtttatccaaacaggcc 157974  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 15757822 - 15757869
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  15757822 aagcgcttgtgctataagctgaaaataagctgtttatccaaacaggcc 15757869  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 1633711 - 1633749
Alignment:
Q  52 tgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  1633711 tgctataagctgcaaataagctgtttatccaaacaggcc 1633749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 41407215 - 41407170
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||    
T  41407215 aagcgcttgtgctataagctgcaaacaagctgtttatccaaacagg 41407170  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 2719383 - 2719341
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaac 85  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  2719383 aagcgtttgtgctataagctgtaaataagctgtttattcaaac 2719341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 10704669 - 10704745
Alignment:
Q  12 attttatctttt-ctataaaactagcttatgaaagcgtttgtgctataagctgtaaataatctgtttatccaaacaggc 89  Q
    |||||||||||| |||||||| ||||||||| ||||  || |||  ||||||| |||||| ||||||||||||||||||    
T  10704669 attttatcttttgctataaaagtagcttatgtaagc--ttatgcattaagctgcaaataagctgtttatccaaacaggc 10704745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 42747909 - 42747952
Alignment:
Q  45 gcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    |||||||||||||||| || |||||| |||||||||||||||||    
T  42747909 gcgtttgtgctataagttgcaaataagctgtttatccaaacagg 42747952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 849592 - 849551
Alignment:
Q  47 gtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  849592 gtttgtgctataagctgcaaataagttgtttatccaaacagg 849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 3846041 - 3846082
Alignment:
Q  47 gtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  3846041 gtttgtgctataagctacaaataagctgtttatccaaacagg 3846082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 30956788 - 30956825
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaaca 86  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  30956788 ttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 30972600 - 30972637
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaaca 86  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  30972600 ttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 40981044 - 40980999
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||    
T  40981044 aagcgcttgtgctataagctgcaaataagctgtttatccaaacagg 40980999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 1058230 - 1058277
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||| ||||||||||||||| |||||| |||||||| ||||||||||    
T  1058230 aagcgcttgtgctataagctgcaaataagctgtttattcaaacaggcc 1058277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 35534772 - 35534812
Alignment:
Q  50 tgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    |||||||||||||| |||||| |||||| ||||||||||||    
T  35534772 tgtgctataagctgcaaataagctgtttttccaaacaggcc 35534812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 24626209 - 24626164
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  24626209 aagcatttgtgctataagctgtaaataagttgtttatccaaacagg 24626164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 6538425 - 6538384
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||||||||||||| |||||| || ||||||||||||||||    
T  6538425 ttgtgctataagctgcaaataagctatttatccaaacaggcc 6538384  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 9210538 - 9210495
Alignment:
Q  47 gtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||    
T  9210538 gtttgcgctataagctgcaaataagctgtttatccaaacaggcc 9210495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 18865206 - 18865249
Alignment:
Q  43 aagcgtttgtgctataagctgtaaataatctgtttatccaaaca 86  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||    
T  18865206 aagcgtttgtgctataagctgcaaataagttgtttatccaaaca 18865249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 33128667 - 33128624
Alignment:
Q  47 gtttgtgctataagctgtaaataatctgtttatccaaacaggcc 90  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||    
T  33128667 gtttgtgctgtaagctgcaaataagctgtttatccaaacaggcc 33128624  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 46280421 - 46280460
Alignment:
Q  49 ttgtgctataagctgtaaataatctgtttatccaaacagg 88  Q
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T  46280421 ttgtgctataagctataaataaactgtttatccaaacagg 46280460  T

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