View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_47 (Length: 383)
Name: NF18993_high_47
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 40859908 - 40859572
Alignment:
| Q |
18 |
ccttggtattgaattaatgcaacaagtgaataagtttaatatnnnnnnnttgggaatttgggtgccacttgttttctaaaagtttttgtaaaatatacga |
117 |
Q |
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| T |
40859908 |
ccttggtattgaattaatgcaacaagtgaagaagtttaatataaaaaaattgggaatttgggtgccacttgttttctaaaagtttt-gtaaaatatacga |
40859810 |
T |
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| Q |
118 |
agttaatagggttgtgataaacttagggatatttatgaaggatcggtaagaatgagagggaagcgaaaataagtagaaatggttttgaaagtgggaggta |
217 |
Q |
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| T |
40859809 |
agttaattggga------------------atttatgaaggatcggtaagaatgagagggaagcgaaaataagtagaaatggttttgaaagtgggaggta |
40859728 |
T |
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| Q |
218 |
gcactatctaaaacttgggctataattaatatagccaacttctcaaatgaaggtaagaagactgattacttagcttccctacaacttacaattactgggg |
317 |
Q |
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| T |
40859727 |
gcactatctaaaacttgggctataa-----atagccaacttctcaaatgaaggtaagaagactgattacttagcttccctacaacttacaattactgggg |
40859633 |
T |
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| Q |
318 |
taatatttttaccttgtaagtttgcaacagaatactgttgtagttttggtgagtataattt |
378 |
Q |
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| T |
40859632 |
taatatttttaccttgtaagtttgcaacagaatactgttgtagttttggtgagtataattt |
40859572 |
T |
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