View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_50 (Length: 369)
Name: NF18993_high_50
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 55605317 - 55604981
Alignment:
| Q |
16 |
atccctcccaattttcatacataaatgaaactcttccctcactatcttcacacagaaatgaacctccaaacgcttcaaagactcaaacttttcaccattc |
115 |
Q |
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| T |
55605317 |
atccctcccaattttcatacataaatgaaactcttccctcactatcttcacacagaaatgaacctccaaacgcttcaaagactcaaacttttcaccattc |
55605218 |
T |
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| Q |
116 |
accctacaatgatcagccaaaactcgaagaaacacgtacaaaccactacacaaaacatgtggcatttcttctaataaacaatcccatttatctaataaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55605217 |
accctacaatgatcagccaaaactcgaagaaacacgtacaaaccactacacaaaacatgtggcatttcttctaataaacaatcccatttatctaataaaa |
55605118 |
T |
|
| Q |
216 |
gtgtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaatttgtctcaaaagggatatcaataaagcatcatagccaatccc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55605117 |
gtgtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaatttgtctcaaaagggatatcaataaagcatcatagccaatccc |
55605018 |
T |
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| Q |
316 |
cgagacttgaatcatttcatcggtgacccaaataagt |
352 |
Q |
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| T |
55605017 |
cgagacttgaatcatttcatcggtgacccaaataagt |
55604981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 218 - 352
Target Start/End: Complemental strand, 44801034 - 44800900
Alignment:
| Q |
218 |
gtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaatttgtctcaaaagggatatcaataaagcatcatagccaatccccg |
317 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||| |||||||||| | |
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| T |
44801034 |
gtcaccattttctcacaaagccacaaattatcatcactgaaatcgctaccaataatttgtctcaaaagggaaatcaataaagcaatgtagccaatccaag |
44800935 |
T |
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| Q |
318 |
agacttgaatcatttcatcggtgacccaaataagt |
352 |
Q |
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||||| |||||||||| || |||||||| |||||| |
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| T |
44800934 |
agactcgaatcatttcgtcagtgacccagataagt |
44800900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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