View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_53 (Length: 362)

Name: NF18993_high_53
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_53
NF18993_high_53
[»] chr8 (3 HSPs)
chr8 (63-346)||(5196409-5196693)
chr8 (63-346)||(31382690-31382970)
chr8 (10-59)||(5196987-5197036)
[»] chr7 (4 HSPs)
chr7 (63-346)||(5640333-5640615)
chr7 (176-271)||(42131896-42131991)
chr7 (278-346)||(42132314-42132382)
chr7 (13-59)||(5640909-5640955)
[»] chr2 (6 HSPs)
chr2 (63-346)||(9676273-9676554)
chr2 (63-346)||(31074963-31075242)
chr2 (63-346)||(35739867-35740149)
chr2 (13-59)||(9676850-9676896)
chr2 (13-59)||(31074623-31074669)
chr2 (13-59)||(35740442-35740488)
[»] chr4 (4 HSPs)
chr4 (63-346)||(35421080-35421356)
chr4 (63-344)||(53668196-53668478)
chr4 (13-59)||(35421651-35421697)
chr4 (14-59)||(53667883-53667928)
[»] chr3 (5 HSPs)
chr3 (63-346)||(12716655-12716936)
chr3 (63-346)||(42710876-42711165)
chr3 (129-346)||(49670231-49670441)
chr3 (16-59)||(12716318-12716361)
chr3 (79-125)||(26981581-26981627)
[»] chr6 (2 HSPs)
chr6 (63-345)||(10901366-10901647)
chr6 (13-59)||(10901026-10901072)
[»] chr1 (6 HSPs)
chr1 (63-346)||(18238554-18238836)
chr1 (176-346)||(25986386-25986554)
chr1 (13-59)||(18239097-18239143)
chr1 (13-59)||(25985973-25986019)
chr1 (63-110)||(25986313-25986360)
chr1 (13-59)||(34575805-34575851)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 5196693 - 5196409
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5196693 aaaatgatgattccggattacataatccgaaatgcgttaaaacaattcggattttataatccagaatgtgattatatggaggatttatctagtatgacca 5196594  T
Q  163 atannnnnnnnnctt-ccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagt 261  Q
    |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  5196593 atatttttttttctttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgggaagaataaatcattggaacatggtgttggagt 5196494  T
Q  262 acttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5196493 acttatttctctacatataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 5196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 63 - 346
Target Start/End: Original strand, 31382690 - 31382970
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  31382690 aaaatgatgtttgcggattacataatccggaatgcgttaaaacaatttggattgtataatccggaatg-gattatatggaggatttctctagtatgacca 31382788  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    ||          |||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| ||| ||||||||    
T  31382789 atttttttttttcttccaaaaacaagctttgaattgtataaaaagtggtttggaatattttgttgggaagaataaatccttggaacccggttttggagta 31382888  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    ||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31382889 cttatttttctac--ataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 31382970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 5197036 - 5196987
Alignment:
Q  10 caaaggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197036 caaaggaacttactgatggtactaaagaatctgatggtttactagttggt 5196987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 5640615 - 5640333
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  5640615 aaaatgatgtttccagattacataatccggaatgcgttaaaacaattcggattttataatccagaatgtgattatatggaggatttctctagtatgacca 5640516  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  5640515 atattatttttttttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgggaagaataaatccttggaacctggtgttggagta 5640416  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5640415 cttatttctctacata-aacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 5640333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 42131896 - 42131991
Alignment:
Q  176 ttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagtacttatttct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  42131896 ttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgggaagaataaatcctcggaacctgctgttggagtacttatttct 42131991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 42132314 - 42132382
Alignment:
Q  278 ataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42132314 ataacaatgctcaaagtatgaagctgacatatccataactcttgtgatgaatgagaaaagtaaagtttc 42132382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 5640955 - 5640909
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  5640955 aggaacttactggtggtactaaagaatctaatggtttactagttggt 5640909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 9676554 - 9676273
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||| || |||| |||||||||||||    
T  9676554 aaaatgatgattccggattacataatccgaaatgcgttgaaacaattcggattttataatctagaatgtgattatatgaagaatttctctagtatgacca 9676455  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    |||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9676454 atattttttttttttccagaaataagctttgaattgcataaaaaatggttgggaatattttgttgggaagaataaatcattggaacctggtgttggagta 9676355  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    ||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9676354 cttatttttctac--ataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 9676273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 63 - 346
Target Start/End: Original strand, 31074963 - 31075242
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31074963 aaaatgatgtttctggattacataatccgaaatgcgttaaaacaattcagattttataatccggaatgtgattatatggaggatttctctagtatgacca 31075062  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    |||          ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  31075063 atatatttttt--ttccagaaacaagctttgaattgcataaaaaatggctgggaatattttgtttggaagaataaatccttggaacctggtgttggagta 31075160  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||||||||  || |||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  31075161 cttatttctctac--atgacaatgctcaaagtatgaagttgacatatccaaaactcttgtgatgaatgagaaaagtaaagtttc 31075242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 35740149 - 35739867
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||| |||| | |||||||||||||||||||||| |||||||||||||    
T  35740149 aaaatgatgcttccggattacataatctggaatgcgttaaaacaatttggattttaaaatctgaaatgtgattatatggaggatttctctagtatgacca 35740050  T
Q  163 atannnnnnnnnctt-ccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagt 261  Q
     ||          || ||| ||||||||||||||||||||||||  |||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  35740049 ttatttttttttttttccataaacaagctttgaattgcataaaatgtggttgagaatattttgttgggaagaataaatccttggaacctagtgttggagt 35739950  T
Q  262 acttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    | ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35739949 atttatttctctac--ataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 35739867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 9676896 - 9676850
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  9676896 aggaacttactggtggtactaaagaatctgatggtttactagttggt 9676850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 31074623 - 31074669
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||    
T  31074623 aggaacttactggtggtactaaagaatctgatggtgtactagttggt 31074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 35740488 - 35740442
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  35740488 aggaacttactggtggtactaaagaatctgatggattactagttggt 35740442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 35421356 - 35421080
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35421356 aaaatgatgtttccggattacataatccggaatgcattaaaacaattcggattttataatccggaatgtgattatatggaggatttctctagtatgacca 35421257  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    |||          ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | |||||||||||    
T  35421256 atattttt-----ttcgagaaacaagctttgaattgcataaaaaatggttggggatattttgttgggaagaataaatccttggaacgtagtgttggagta 35421162  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  35421161 cttatttctct--atataacaatgctcaaagtatgaagctaacatatccagaactcttgtgattaatgagaaaagtaaagtttc 35421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 63 - 344
Target Start/End: Original strand, 53668196 - 53668478
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  53668196 aaaatgatgattccggattacataatctggaatgcgttaaaacaattcggattttataatcaggaatgtgattatatggaggacttctctagtatgacca 53668295  T
Q  163 atannnnnnnnnc---ttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttgga 259  Q
    |||             ||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  53668296 atattttttttttcttttccaaaaacaagctttgaattgcataaaatatggttgagaatattttgttgggaagaataaatcattgaaacctggtgttgga 53668395  T
Q  260 gtacttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtt 344  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  53668396 gtacttatttctctac--ataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtt 53668478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 35421697 - 35421651
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  35421697 aggaacttactggtggtactaaagaatctgatggtttactagttggt 35421651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 53667883 - 53667928
Alignment:
Q  14 ggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  53667883 ggaacttactggtggtactaaagaatctgatggtttactagttggt 53667928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 63 - 346
Target Start/End: Original strand, 12716655 - 12716936
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  12716655 aaaatgatgattccggattacataattcggaattcgttaaaacaattcggattttataatccggaatgtgattatatgaaggatttgtctagtatgacca 12716754  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagta 262  Q
    |||          ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  12716755 atattattattttttccacaaacaagctttgaattgcataaaaaatggttcggaatattttgttgggaagaataaatcattgtaacctggagttggagta 12716854  T
Q  263 cttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||||||||  ||||||||||||||||||| || |||||||||| | |||||||||||||| ||||||||||||||||||    
T  12716855 cttatttctctac--ataacaatgctcaaagtatgaaactgacatatcaataactcttgtgatgaatgagaaaagtaaagtttc 12716936  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 42711165 - 42710876
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  42711165 aaaatgatgtttccggattacataatccgaaatgcgttaaaacaattcggattttataattcggaatgtgattatatggaggatttctctagtatgacca 42711066  T
Q  163 atannnnnnnnncttc--------cagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtg 254  Q
    |||          ||         |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  42711065 atactttttttttttttttttcttcagaaacaagctttgaattgcataaaaaatggttgggaatattttgttcggaagaataaatccttggaacctggtg 42710966  T
Q  255 ttggagtacttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  42710965 ttggagtatttatttctctac--ataacaatgctcaaagtatgaagctgacatatccagaactctagtgatgaatgagaaaagtaaagtttc 42710876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 129 - 346
Target Start/End: Complemental strand, 49670441 - 49670231
Alignment:
Q  129 tgtgattatatggaggatttatctagtatgaccaatannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgg 228  Q
    |||||||||||||||||||| ||||||||||||| ||          ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  49670441 tgtgattatatggaggatttctctagtatgaccattattttt-----ttccataaaaaagctttgaattgcataaaaagtggttgggaatattttgttgg 49670347  T
Q  229 aaagaataaatcattggaacctggtgttggagtacttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgat 328  Q
     ||||||||||  |||||||||||||||| ||||||||||| |||||  ||||||||||||||||||| ||||||| ||||| ||||||||||||||||     
T  49670346 gaagaataaattcttggaacctggtgttgaagtacttatttttctac--ataacaatgctcaaagtatgaagctgaaatatctagaactcttgtgatgag 49670249  T
Q  329 tgagaaaagtaaagtttc 346  Q
    ||||||||||||||||||    
T  49670248 tgagaaaagtaaagtttc 49670231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 12716318 - 12716361
Alignment:
Q  16 aacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  12716318 aacttactggtggtactaaagaatatgatggtttactagttggt 12716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 26981627 - 26981581
Alignment:
Q  79 attacataatccggaatgctttaaaacaattcggattttataatccg 125  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  26981627 attacataatccggaatgtgttaaaacaatccggattttataatccg 26981581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 63 - 345
Target Start/End: Original strand, 10901366 - 10901647
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  10901366 aaaataatgtttccggattacataattcggaatgcgttaaaacaattcggactttataatccagaatgtgattatatggaggatttctctagtatgacca 10901465  T
Q  163 atannnnnnnnncttcc-agaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagt 261  Q
    |||         ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  10901466 atatttttttttcttcccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatccttggaacttgatgttggagt 10901565  T
Q  262 acttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagttt 345  Q
    |||||||||| |||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  10901566 acttatttctttac--ataacaatgctcaaagtatgaagctcacatatccagaactcttgtgctgaatgagaaaagtaaagttt 10901647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 10901026 - 10901072
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10901026 aggaacttactggtggtactaaagaatctgatggtttactagttggt 10901072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 18238836 - 18238554
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattcggattttataatccggaatgtgattatatggaggatttatctagtatgacca 162  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||| |||||||||||||    
T  18238836 aaaatgatgtttccggattacataatccggaatgcgttaaaacaattcggattttataatatggaatgtgattatattgaggatttctctagtatgacca 18238737  T
Q  163 atannnnnnnnncttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggt----gttgg 258  Q
    |||          || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    |||||    
T  18238736 atattttttt---tttcataaacaagctttgaattgcataaaaaatggttgggaatattttgttgggaagaataaatccttggaacctggtgtccgttgg 18238640  T
Q  259 agtacttatttctctacatataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
    |||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  18238639 agtacttatttctctac--ataacaatgctcaaagtatgaagctaacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 18238554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 25986386 - 25986554
Alignment:
Q  176 ttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttggaaagaataaatcattggaacctggtgttggagtacttatttctctac 275  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25986386 ttccagaaacaagctttgaattgcataaaaaatggttggaaatattttgttgggaagaataaatcattggaacctggtgttggagtacttatttctctac 25986485  T
Q  276 atataacaatgctcaaagtatcaagctgacatatccagaactcttgtgatgattgagaaaagtaaagtttc 346  Q
      || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25986486 --attacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 25986554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 18239143 - 18239097
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  18239143 aggaacttactggtggtactaaagaatctgatggtttactagttggt 18239097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 25985973 - 25986019
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25985973 aggaacttactggtggtactaaagaatctgatggtttactagttggt 25986019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 25986313 - 25986360
Alignment:
Q  63 aaaatgatgattccggattacataatccggaatgctttaaaacaattc 110  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  25986313 aaaatgatgattccggataacataatccggaatgcgttaaaacaattc 25986360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 34575851 - 34575805
Alignment:
Q  13 aggaacttactgatggtactaaagaatctgatggtttactagttggt 59  Q
    ||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34575851 aggaatttactggtagtactaaagaatctgatgatttactagttggt 34575805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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