View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_59 (Length: 342)
Name: NF18993_high_59
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 17435895 - 17436206
Alignment:
| Q |
11 |
catcatcatagctaaaggtcaagtaccaagtcaaacatcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccagtt |
110 |
Q |
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| T |
17435895 |
catcatcataactaacggtcaagcaccaaatcaaacatcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccggtt |
17435994 |
T |
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| Q |
111 |
atcggcatcaacggaagggtttggtcttaccactcattcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaagtcaaa |
210 |
Q |
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| T |
17435995 |
atcggcatcaacggaagggtttggtcttaccactcattcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaactcaaa |
17436094 |
T |
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| Q |
211 |
ttggaagggcacaaggtgtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtag |
310 |
Q |
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| T |
17436095 |
ttggaagggcacaaggtgtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgtgttcaacaatggggaatatagtggtag |
17436194 |
T |
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| Q |
311 |
cactttggagat |
322 |
Q |
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| T |
17436195 |
cactttggagat |
17436206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 47 - 324
Target Start/End: Original strand, 17432058 - 17432335
Alignment:
| Q |
47 |
atcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccagttatcggcatcaacggaagggtttggtcttaccactca |
146 |
Q |
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| T |
17432058 |
atcaaccttggtgttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactca |
17432157 |
T |
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| Q |
147 |
ttcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaagtcaaattggaagggcacaaggtgtaattacagtgacatctc |
246 |
Q |
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| T |
17432158 |
tttggaacaatatttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctc |
17432257 |
T |
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| Q |
247 |
tagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtagcactttggagattc |
324 |
Q |
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| T |
17432258 |
ttgatggttcaaatgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattc |
17432335 |
T |
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