View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_6 (Length: 582)
Name: NF18993_high_6
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Complemental strand, 25336332 - 25335778
Alignment:
| Q |
9 |
cataggcaaaagttgacataattgggctaatttaacatgaagaaagaaaagactaaaagtggcacgtttctaaaatagaaatatatggttaaggttgaat |
108 |
Q |
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| T |
25336332 |
cataagcaaaagttgacataattgggctaatttaacatgaagaaagaaaagactaaaagtggcacgtttctaaaatagaaatatatggttaaggttgaat |
25336233 |
T |
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| Q |
109 |
tgcgtatgtgattgatagtaggtgagatacacggttttaatgtacttgaaacttagcatgagatacaaacttagatgaatttaattgtattggaatatga |
208 |
Q |
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| T |
25336232 |
tgcgtatgtgattgatagtaggtgagatacacggttttaatgtacttgaaacttagcatgagatacaaacttagctgaatttaattgtattgcaatatga |
25336133 |
T |
|
| Q |
209 |
ttttgtttgtatacatgatgtagtgatttgtcatataacattttttagacaattctatcacttttgaggaatgagtgagaatttgtttaccgtctgaaaa |
308 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25336132 |
ttttgtttgtatacatgatgtagtgatt----aaataacattttttagacaattctatcacttttgaggaatgagtgagaatttgtttaccgtctgaaaa |
25336037 |
T |
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| Q |
309 |
tgataattagttggcacattcaaattatttctgttaataagtttcaatataagatgatataagttaatatatatcacatttggcctctttnnnnnnnnnt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
25336036 |
tgataattagttggcacattcaaattatttctgttaataagtttcaatataagatgatataagttaatatatatcacatttggcctc-ttaaaaaaaaat |
25335938 |
T |
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| Q |
409 |
ataagatggcataatataatgtatttatttctctgagatttataaaacaagtaatgtttccatgcatgacccacaccatacatctttgtttcctagtgct |
508 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25335937 |
ataagatgacataatataatgtatttatttctctgagatttataaaacaagtaatgtttccatgcatgacccacaccatacatctttgtttcctagtgct |
25335838 |
T |
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| Q |
509 |
aaactctgtttttctttatggtttgtgccaaattctgttttcaacaaggtaaatccgaat |
568 |
Q |
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| T |
25335837 |
aaactctgtttttctttatggtttgtgccaaattctgttttcaacatggtaaatccgaat |
25335778 |
T |
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