View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_69 (Length: 320)
Name: NF18993_high_69
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 30424035 - 30424319
Alignment:
| Q |
17 |
atgaaagtgttttacaggaaattcgttacaccaatggttttaataaatcaatcaaacaatttcaaaagtatgcaaaacaacagtagacagtagcaaaact |
116 |
Q |
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| T |
30424035 |
atgaaagcgttttacaggaaattcgttacaccaagggttttaataaatcaatcaaacaatttcaaaattatgcaaaacaacagtagacagtagcaaaact |
30424134 |
T |
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| Q |
117 |
gacagtttgctatgagaaggctctcaaggttagtatttacagtcataagcgggttggataaaccctatattctaggcgtttagttacttggataagaata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
30424135 |
gacagtttgctatgagaaggctctcaaggttagtatttacagtcataagcgggttggataaaccctatattctaggcatttagttactttgataagaata |
30424234 |
T |
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| Q |
217 |
actatcaggggttctagctgcttttagaatgtgctcattggtggtgcctataaaggtgccgcctttgcttgcttcgaccctttag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
30424235 |
actatcaggggttctagctgcttttagaatgtgctcattcgtgatgcctgtaaaggtgccacctttgcttgcttcgagcctttag |
30424319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 272
Target Start/End: Complemental strand, 29492982 - 29492839
Alignment:
| Q |
129 |
tgagaaggctctcaaggttagtatttacagtcataagcgggttggataaaccctatattctaggcgtttagttacttggataagaataactatcaggggt |
228 |
Q |
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||||||||||||||||||| ||||||| || |||||| |||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
29492982 |
tgagaaggctctcaaggtttgtatttatagccataagtgggttggataaaccatctattctaggtgtttagttacttggataaggataactatcaggggt |
29492883 |
T |
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| Q |
229 |
tctagctgcttttagaatgtgctcattggtggtgcctataaagg |
272 |
Q |
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| T |
29492882 |
tctacttgcttctagaatgtgctcattggcggtgactataaagg |
29492839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 21271720 - 21271570
Alignment:
| Q |
131 |
agaaggctctcaaggttagtatttacagtca-taagcgggttggataaaccctatattctaggcgtttagttacttggataagaataactatcaggggtt |
229 |
Q |
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|||| |||||||||||| ||||||| ||||| ||||||| ||||||||||||| |||| ||||||||||||||| ||||||| || | ||||||||||| |
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| T |
21271720 |
agaatgctctcaaggttggtatttatagtcaataagcgg-ttggataaaccctctattttaggcgtttagttacagggataaggatgaatatcaggggtt |
21271622 |
T |
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| Q |
230 |
ctagctgcttttagaatgtgctcattggtggtgcctataaaggtgccgcctt |
281 |
Q |
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| T |
21271621 |
ctacctgcttctagaacctgcttattggtggtgtctataaaggcgccgcctt |
21271570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 281
Target Start/End: Original strand, 56252279 - 56252431
Alignment:
| Q |
129 |
tgagaaggctctcaaggttagtatttacagtcataagcgggttggataaaccctatattctaggcgtttagttacttggataagaataactatcaggggt |
228 |
Q |
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|||||| ||||| |||||| ||||||| || |||||||| ||||||||| |||| | || ||||||| ||||||| ||||||| |||| |||||||||| |
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| T |
56252279 |
tgagaatgctcttaaggttggtatttatagccataagcgagttggataagccctttgttttaggcgtatagttacggggataaggataattatcaggggt |
56252378 |
T |
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| Q |
229 |
tctagctgcttttagaatgtgctcattggtggtgcctataaaggtgccgcctt |
281 |
Q |
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||||| |||| |||||| |||| || | |||||||||||||| ||||||| |
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| T |
56252379 |
tctagtcgcttctagaatatgcttatagacggtgcctataaaggcaccgcctt |
56252431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 13469763 - 13469666
Alignment:
| Q |
129 |
tgagaaggctctcaaggttagtatttacagtcataagcgggttggataaaccctatattctaggcgtttagttacttggataagaataactatcaggg |
226 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||| |||||||| | |||| |||| ||| ||||||||||||||| ||||| ||||||| |
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| T |
13469763 |
tgagaaggctctcaaggttagtatttatagtcattaaagggttagataaaccttctattttaggtgttaagttacttggataaggataaccatcaggg |
13469666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 19505432 - 19505508
Alignment:
| Q |
52 |
ggttttaataaatcaatcaaacaatttcaaaagtatgcaaaacaac-agtagacagtagcaaaactgacagtttgct |
127 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
19505432 |
ggttttaataaatcaatcaaacaatgacaaatttatgcaaaccaattagtagatagtagcaaaactgacagtttgct |
19505508 |
T |
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