View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_71 (Length: 316)
Name: NF18993_high_71
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 12958985 - 12958714
Alignment:
| Q |
7 |
acttttaaagtgttacttgcaatgccacaacagatgatttaattggaagctctaagtgccccccgatttgcaacttcagtttcgcccgcgaaaacaacaa |
106 |
Q |
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| T |
12958985 |
acttttaaagtgttacttacaatgccacaatagatgatttgatgggaagctctaagtgccacccgatttgcaactccattttcgcccgcgaaaacaacaa |
12958886 |
T |
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| Q |
107 |
aacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttca |
206 |
Q |
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| T |
12958885 |
aacttgtggcttgatggcttacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggactttttca |
12958786 |
T |
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| Q |
207 |
gcctctaccacattttacaactccaacccctttgtccttctcttt-aagaat-gatcacaccattgcctcac |
276 |
Q |
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| T |
12958785 |
gcctctaccacattttacaactccaacccctttgtccttctctttaaagaatggatcacaccattgcctcac |
12958714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 13866813 - 13866960
Alignment:
| Q |
107 |
aacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttca |
206 |
Q |
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| T |
13866813 |
aacttgaggcttgatgccttacaaagtaaagaaaatccaattttatat--tgaactttctggctgtgtgttctgactttaaaggatgtgggacttcttca |
13866910 |
T |
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| Q |
207 |
gcctctaccacattttacaactccaacccctttgtccttctctttaagaa |
256 |
Q |
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| T |
13866911 |
gcctctaccagtttttacaactccaacctctttgtccttctctttaagaa |
13866960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 13864994 - 13865151
Alignment:
| Q |
38 |
agatgatttaattggaagctctaagtgccccccgatttgcaac------ttcagtttcgcccgcgaaaacaacaaaacttgtggctcgatggct---gac |
128 |
Q |
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| T |
13864994 |
agatgatttgatgggaagctctaaatgccacccaatttacaaccccagtttcactttcacccgtgaaaacaataaaacttgtggcttgatggcttactac |
13865093 |
T |
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| Q |
129 |
atagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaa |
188 |
Q |
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| T |
13865094 |
atagcaaagaattcccaattt--tatattaaactttttggctgcgtttattgaatttaaa |
13865151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 13865154 - 13865209
Alignment:
| Q |
258 |
gatcacaccattgcctcacaatgttatgcttatcttatatttatttcatctcactc |
313 |
Q |
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| T |
13865154 |
gatcaaaccattgcttcacaatgttatgcttatcttatatttatttcatttcactc |
13865209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 48708624 - 48708578
Alignment:
| Q |
159 |
aactttttggctgtgtgtattgactttaaacgatgtgggacttcttc |
205 |
Q |
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| T |
48708624 |
aactttctggctgtgtgtattgactttaaacgatgttggacttcttc |
48708578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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