View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_77 (Length: 297)

Name: NF18993_high_77
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_77
NF18993_high_77
[»] chr7 (12 HSPs)
chr7 (18-289)||(10498689-10498961)
chr7 (18-289)||(10503718-10503990)
chr7 (193-289)||(13337895-13337991)
chr7 (193-286)||(13345207-13345300)
chr7 (193-289)||(13337299-13337395)
chr7 (18-108)||(13343178-13343268)
chr7 (18-120)||(10531594-10531697)
chr7 (18-117)||(13346095-13346194)
chr7 (130-192)||(10531506-10531569)
chr7 (130-192)||(13346002-13346065)
chr7 (130-192)||(13343078-13343141)
chr7 (256-288)||(15565976-15566008)
[»] chr8 (1 HSPs)
chr8 (21-120)||(18944807-18944906)
[»] chr3 (2 HSPs)
chr3 (230-289)||(35457945-35458004)
chr3 (57-102)||(35455214-35455259)
[»] chr1 (1 HSPs)
chr1 (130-164)||(6480469-6480503)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 10498961 - 10498689
Alignment:
Q  18 atttattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaagcattctagacgattttcttactaagagatcaaagaacaactacta 117  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |    
T  10498961 atttattgcatatctgagcgtatgtcaggatataacacctatataatttggaaagcattctagacgattttcttaccaagagatcaaagaacagctacca 10498862  T
Q  118 acannnnnnnnn-gctgaaggtggatttgttgtggttcacaaaggaattgctcaaaatggccaagctatcgcaatgttctctatttagttgtgaagtttt 216  Q
    |||          ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10498861 acatttttttgttgctgaaggtggatttgttgtggttcccaaaggaattactcaaaatggccaagctatcgcaatgttctctatttagttgtgaattttt 10498762  T
Q  217 tctattaatagaactcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttcttctc 289  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  10498761 tctattaatagaactcacatagtacattctatataccgaaaagtatttcgaaacttcaaatcattttcttctc 10498689  T

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Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 10503990 - 10503718
Alignment:
Q  18 atttattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaagcattctagacgattttcttactaagagatcaaagaacaactacta 117  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |    
T  10503990 atttattgcatatctgagcgtatgtcaggatataacacctatataatttggaaagcattctagacgattttcttaccaagagatcaaagaacagctacca 10503891  T
Q  118 acannnnnnnnn-gctgaaggtggatttgttgtggttcacaaaggaattgctcaaaatggccaagctatcgcaatgttctctatttagttgtgaagtttt 216  Q
    |||          ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10503890 acatttttttgttgctgaaggtggatttgttgtggttcccaaaggaattactcaaaatggccaagctatcgcaatgttctctatttagttgtgaattttt 10503791  T
Q  217 tctattaatagaactcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttcttctc 289  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  10503790 tctattaatagaactcacatagtacattctatataccgaaaagtatttcgaaacttcaaatcattttcttctc 10503718  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 13337991 - 13337895
Alignment:
Q  193 ttctctatttagttgtgaagtttttctattaatagaactcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttcttctc 289  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  13337991 ttctctatttagttgtgaattttttctattaatagaactcacatagtacattctatacactgaaaagtatttcgaaacttcaaatcattttcttctc 13337895  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 13345300 - 13345207
Alignment:
Q  193 ttctctatttagttgtgaagtttttctattaatagaactcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttctt 286  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || | ||||||||| |||| ||||||||||||||||    
T  13345300 ttctctatttagttgtgaattttttccattaatagaactcacatagtacattctatacaccgaaaagtattttgaaatttcaaatcattttctt 13345207  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 13337395 - 13337299
Alignment:
Q  193 ttctctatttagttgtgaagtttttctattaatagaactcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttcttctc 289  Q
    |||||||| ||||||| || |||||||||||||||| || ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  13337395 ttctctatctagttgtaaattttttctattaatagagctgacatagtacattctatacaccgaaaagtatttcgaaacttcaaatcattttcttctc 13337299  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 13343268 - 13343178
Alignment:
Q  18 atttattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaagcattctagacgattttcttactaagagatcaaagaa 108  Q
    ||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  13343268 atttattgcatatgtgaacgtgtgtcaggatatagcccctatataatttggaaagctttctagacgatttttttactaagagatcgaagaa 13343178  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 10531697 - 10531594
Alignment:
Q  18 atttattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaa-gcattctagacgattttcttactaagagatcaaagaacaactact 116  Q
    ||||||| ||||||||||| |||||||||||||| |||| |||||| ||||||| || |||||||||||||||||||||||||||| ||||| | |||||    
T  10531697 atttattgcatatgtgagcatatgtcaggatataccacccatataacttggaaaagctttctagacgattttcttactaagagatcgaagaagagctact 10531598  T
Q  117 aaca 120  Q
    ||||    
T  10531597 aaca 10531594  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 13346194 - 13346095
Alignment:
Q  18 atttattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaagcattctagacgattttcttactaagagatcaaagaacaactacta 117  Q
    ||||||| ||||||||| ||| |||||||||||||  | ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| | ||||||    
T  13346194 atttattgcatatgtgaacgtgtgtcaggatataggccttatataatttggaaagctttctagacgatttttttactaagagatcgaagaagagctacta 13346095  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 10531569 - 10531506
Alignment:
Q  130 gctgaaggtggatttgttgtggttcacaaaggaattgctcaaa-atggccaagctatcgcaatg 192  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  10531569 gctgaaggtggattttttgtggttcacaaagaaattactcaaagatggccaagctatcgcaatg 10531506  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 13346065 - 13346002
Alignment:
Q  130 gctgaaggtggatttgttgtggttcacaaaggaattgctcaaa-atggccaagctatcgcaatg 192  Q
    ||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||    
T  13346065 gctgaaggtagatttgttgtggttcacaaaggaattattcaaagatggccaagctattgcaatg 13346002  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 13343141 - 13343078
Alignment:
Q  130 gctgaaggtggatttgttgtggttcacaaaggaattgctcaaa-atggccaagctatcgcaatg 192  Q
    ||||||| | ||| |||||||||||| ||||||||| |||||| |||||||||||||| |||||    
T  13343141 gctgaagctagatctgttgtggttcagaaaggaattactcaaagatggccaagctatcacaatg 13343078  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 15566008 - 15565976
Alignment:
Q  256 aaagtatttcgaaacttcaaatcattttcttct 288  Q
    ||||||||| |||||||||||||||||||||||    
T  15566008 aaagtattttgaaacttcaaatcattttcttct 15565976  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 18944906 - 18944807
Alignment:
Q  21 tattacatatgtgagcgtatgtcaggatatagcacctatataatttggaaagcattctagacgattttcttactaagagatcaaagaacaactactaaca 120  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||  ||||| | |||||||||    
T  18944906 tattacatatgtgagcatgtgtcaggatatagcacctatataatttggaaagctttctagatgattttcttacaaagagatagaagaagagctactaaca 18944807  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 35458004 - 35457945
Alignment:
Q  230 ctcacatagtacattctatatactggaaagtatttcgaaacttcaaatcattttcttctc 289  Q
    ||||||||||||||||||||    | |||||||||| ||| |||||||||||||||||||    
T  35458004 ctcacatagtacattctatacgtcgaaaagtatttcaaaatttcaaatcattttcttctc 35457945  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 35455259 - 35455214
Alignment:
Q  57 tatataatttggaaagcattctagacgattttcttactaagagatc 102  Q
    ||||||||||||||||| ||||| ||||||||||||| ||| ||||    
T  35455259 tatataatttggaaagctttctatacgattttcttacaaagggatc 35455214  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 6480469 - 6480503
Alignment:
Q  130 gctgaaggtggatttgttgtggttcacaaaggaat 164  Q
    |||||||||||||||| ||||||||||||||||||    
T  6480469 gctgaaggtggatttggtgtggttcacaaaggaat 6480503  T

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