View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_high_79 (Length: 297)
Name: NF18993_high_79
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_79 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 33664014 - 33664296
Alignment:
| Q |
1 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33664014 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
33664113 |
T |
|
| Q |
101 |
tggcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33664114 |
tggcaatgttttttgtaaacatgaagaaaattatacgtagtgtgttccatactttctttgtaactaccattgtttggtttgtttcaatttccattgttgt |
33664213 |
T |
|
| Q |
201 |
aacggtttgatgagtttgtgagtgnnnnnnnngttttgttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgat |
286 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
33664214 |
aacggtttgataagtttgtgagtg---tttttgttttgttgagagagagaatgagaatgtgtgaacgtgtgtaattggattgtgat |
33664296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33685804 - 33686027
Alignment:
| Q |
1 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33685804 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattgtgctaccattttgcttt |
33685903 |
T |
|
| Q |
101 |
tggcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33685904 |
tggctatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
33686003 |
T |
|
| Q |
201 |
aacggtttgatgagtttgtgagtg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33686004 |
aacggtttgatgagtttgtgagtg |
33686027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 33674616 - 33674837
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
33674616 |
cgagtggtggcggagagtgagagtgttggctatagctttgatggcggcgagtttgctacgttttagcaagagattaaattgtgctaccattttgcttttg |
33674715 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaa |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33674716 |
gctatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaa |
33674815 |
T |
|
| Q |
203 |
cggtttgatgagtttgtgagtg |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33674816 |
cggtttgatgagtttgtgagtg |
33674837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 33693033 - 33693225
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
33693033 |
cgagtggtggcggagagtgagagtgttggctatggctttgatagcggcgagtttgccacgttttagcaagagatttaattgtgctaccattttgcttttg |
33693132 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33693133 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatatccatt |
33693225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 33674861 - 33674908
Alignment:
| Q |
239 |
ttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgat |
286 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
33674861 |
ttgagagaaagaatgagaataggtgaacgtatgtgattggattgtgat |
33674908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 33686051 - 33686098
Alignment:
| Q |
239 |
ttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgat |
286 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
33686051 |
ttgagagaaagaatgagaataggtgaacgtatgtgattggattgtgat |
33686098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 86745 - 86524
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
86745 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttagcaagagatttaattctgctaccattttgctttta |
86646 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttcca-------tt |
195 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || |
|
|
| T |
86645 |
gctatgttttttgttaacatgaacaaaattatacgcagtgtgttccatactttctttgttactataattagttggtttgtttcaatttccattcttgttt |
86546 |
T |
|
| Q |
196 |
gttgtaacggtttgatgagttt |
217 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
86545 |
gttgtaacggtttgatgagttt |
86524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 103411 - 103199
Alignment:
| Q |
6 |
gtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttggca |
105 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
103411 |
gtggtggcggagggtgagagggttggctatggctttgatagcggcgagcttgctacgttttagcaagagatttaattgtgctacctttttgcttttggct |
103312 |
T |
|
| Q |
106 |
atgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaacgg |
205 |
Q |
| |
|
||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
103311 |
atgtttttttttaacattaacaaaattagacgtagtgtgttccatactttctttgttactatcattggttgggttgtttcaatttccattgttgtaacgg |
103212 |
T |
|
| Q |
206 |
tttgatgagtttg |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
103211 |
tttgatgagtttg |
103199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University