View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_high_82 (Length: 289)

Name: NF18993_high_82
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_high_82
NF18993_high_82
[»] chr1 (23 HSPs)
chr1 (137-289)||(38859871-38860022)
chr1 (169-289)||(10907637-10907756)
chr1 (145-256)||(5975040-5975151)
chr1 (145-256)||(10155981-10156092)
chr1 (145-256)||(47022754-47022865)
chr1 (147-256)||(49902520-49902629)
chr1 (167-256)||(42456624-42456713)
chr1 (145-252)||(48392371-48392478)
chr1 (145-256)||(42517259-42517374)
chr1 (157-256)||(3346838-3346937)
chr1 (145-256)||(7742744-7742855)
chr1 (202-256)||(23908337-23908391)
chr1 (166-256)||(30745396-30745486)
chr1 (166-256)||(30766847-30766937)
chr1 (170-258)||(14796926-14797014)
chr1 (170-258)||(14805800-14805888)
chr1 (174-258)||(26835388-26835472)
chr1 (202-256)||(29149570-29149624)
chr1 (173-251)||(37189697-37189774)
chr1 (215-258)||(5558359-5558402)
chr1 (193-257)||(13131947-13132011)
chr1 (198-243)||(44107406-44107451)
chr1 (214-254)||(44462512-44462552)
[»] chr4 (26 HSPs)
chr4 (137-289)||(17888507-17888658)
chr4 (137-258)||(31377440-31377560)
chr4 (145-256)||(1535823-1535934)
chr4 (145-256)||(35018988-35019098)
chr4 (172-258)||(46474044-46474130)
chr4 (169-256)||(25954802-25954889)
chr4 (169-256)||(49284409-49284496)
chr4 (137-257)||(11054507-11054626)
chr4 (170-258)||(47084062-47084150)
chr4 (147-258)||(20818617-20818728)
chr4 (169-256)||(34241045-34241132)
chr4 (145-256)||(36012151-36012261)
chr4 (185-258)||(9742538-9742611)
chr4 (145-256)||(16338178-16338289)
chr4 (145-239)||(36851352-36851446)
chr4 (165-258)||(33982054-33982147)
chr4 (174-242)||(10094387-10094455)
chr4 (169-256)||(50328848-50328935)
chr4 (169-231)||(19124727-19124789)
chr4 (202-256)||(46583563-46583617)
chr4 (177-258)||(12792228-12792309)
chr4 (145-289)||(322509-322657)
chr4 (193-256)||(52632570-52632633)
chr4 (56-130)||(56107516-56107590)
chr4 (173-289)||(35322697-35322812)
chr4 (216-256)||(5780790-5780830)
[»] chr5 (24 HSPs)
chr5 (127-289)||(8456910-8457071)
chr5 (145-256)||(38397650-38397761)
chr5 (145-289)||(39862452-39862594)
chr5 (145-256)||(6257375-6257486)
chr5 (145-256)||(16618535-16618646)
chr5 (145-256)||(15631665-15631777)
chr5 (145-256)||(37168998-37169109)
chr5 (169-258)||(10115210-10115299)
chr5 (173-258)||(36769067-36769152)
chr5 (137-258)||(10081195-10081318)
chr5 (145-256)||(23218537-23218648)
chr5 (173-256)||(33271263-33271346)
chr5 (179-257)||(29790218-29790296)
chr5 (137-289)||(25560285-25560435)
chr5 (183-258)||(42119672-42119747)
chr5 (145-250)||(29491379-29491483)
chr5 (168-256)||(10052488-10052576)
chr5 (170-242)||(27916206-27916278)
chr5 (185-289)||(614397-614500)
chr5 (179-258)||(9737980-9738061)
chr5 (172-256)||(6174796-6174882)
chr5 (169-258)||(11856345-11856434)
chr5 (171-257)||(3341111-3341197)
chr5 (187-240)||(33188330-33188383)
[»] chr8 (17 HSPs)
chr8 (137-256)||(42072480-42072599)
chr8 (134-258)||(16523156-16523280)
chr8 (145-256)||(33934334-33934445)
chr8 (145-256)||(21525410-21525521)
chr8 (145-256)||(22324648-22324759)
chr8 (145-256)||(35806846-35806957)
chr8 (174-256)||(19334835-19334917)
chr8 (146-256)||(26021448-26021558)
chr8 (145-256)||(42013924-42014035)
chr8 (169-255)||(10112100-10112186)
chr8 (169-254)||(16591364-16591449)
chr8 (149-258)||(21488116-21488225)
chr8 (164-242)||(2824166-2824244)
chr8 (176-242)||(43282847-43282913)
chr8 (172-242)||(16818965-16819035)
chr8 (211-257)||(24065324-24065370)
chr8 (185-258)||(2271245-2271318)
[»] chr7 (18 HSPs)
chr7 (169-289)||(17303103-17303223)
chr7 (137-289)||(19334517-19334669)
chr7 (145-256)||(44164708-44164819)
chr7 (146-256)||(34707168-34707278)
chr7 (137-256)||(29555896-29556015)
chr7 (147-256)||(10576725-10576834)
chr7 (169-289)||(33057646-33057765)
chr7 (145-256)||(34259570-34259681)
chr7 (146-256)||(29981079-29981189)
chr7 (169-258)||(10334228-10334317)
chr7 (169-256)||(24320428-24320515)
chr7 (145-256)||(29238108-29238219)
chr7 (173-256)||(32876523-32876606)
chr7 (185-258)||(15017823-15017896)
chr7 (185-235)||(43342483-43342533)
chr7 (159-214)||(41853205-41853260)
chr7 (137-228)||(2702189-2702280)
chr7 (185-258)||(9770709-9770782)
[»] chr2 (19 HSPs)
chr2 (145-256)||(29846494-29846605)
chr2 (145-256)||(42769723-42769834)
chr2 (148-256)||(14942012-14942120)
chr2 (137-256)||(3956624-3956743)
chr2 (145-256)||(14186403-14186514)
chr2 (145-256)||(19181600-19181711)
chr2 (182-289)||(33009692-33009799)
chr2 (171-285)||(6318448-6318563)
chr2 (145-256)||(40277253-40277364)
chr2 (173-289)||(43139766-43139882)
chr2 (179-258)||(14539703-14539782)
chr2 (192-289)||(41674718-41674815)
chr2 (178-252)||(28321701-28321775)
chr2 (193-289)||(40780075-40780171)
chr2 (145-219)||(3597855-3597929)
chr2 (204-289)||(1387312-1387395)
chr2 (193-258)||(2888091-2888156)
chr2 (137-209)||(1386119-1386191)
chr2 (216-256)||(23685406-23685446)
[»] chr3 (26 HSPs)
chr3 (169-289)||(19649361-19649481)
chr3 (145-256)||(44994933-44995045)
chr3 (137-256)||(5391509-5391628)
chr3 (147-289)||(20382539-20382679)
chr3 (149-256)||(8950473-8950580)
chr3 (145-256)||(13856151-13856262)
chr3 (145-256)||(21853249-21853360)
chr3 (169-289)||(43347325-43347444)
chr3 (169-289)||(10839369-10839488)
chr3 (157-256)||(32352899-32352998)
chr3 (145-256)||(40845882-40845993)
chr3 (171-258)||(1781812-1781899)
chr3 (170-257)||(3178754-3178841)
chr3 (149-256)||(36539684-36539791)
chr3 (185-258)||(54546954-54547027)
chr3 (178-258)||(22845360-22845440)
chr3 (173-258)||(6280352-6280437)
chr3 (147-255)||(50663187-50663296)
chr3 (169-289)||(8926786-8926906)
chr3 (170-242)||(27642726-27642798)
chr3 (202-256)||(23467516-23467570)
chr3 (175-256)||(46685779-46685859)
chr3 (199-258)||(48206904-48206962)
chr3 (180-256)||(51336261-51336337)
chr3 (199-251)||(19644346-19644398)
chr3 (208-256)||(47889778-47889826)
[»] chr6 (12 HSPs)
chr6 (148-256)||(9231822-9231930)
chr6 (145-256)||(24694616-24694727)
chr6 (171-258)||(13103109-13103196)
chr6 (145-256)||(13627592-13627703)
chr6 (172-258)||(27863749-27863836)
chr6 (166-256)||(28750636-28750726)
chr6 (171-256)||(1727924-1728009)
chr6 (171-252)||(24497565-24497646)
chr6 (180-256)||(14309798-14309874)
chr6 (199-258)||(34103735-34103794)
chr6 (180-233)||(11084665-11084718)
chr6 (169-210)||(34088788-34088829)
[»] scaffold0079 (1 HSPs)
scaffold0079 (145-256)||(54571-54682)
[»] scaffold0086 (1 HSPs)
scaffold0086 (185-258)||(20836-20909)
[»] scaffold0045 (1 HSPs)
scaffold0045 (185-258)||(34457-34530)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 38860022 - 38859871
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||    
T  38860022 gttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaaccccta 38859923  T
Q  237 taaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    |||||| | |||||| ||||||        |||||||||||||||||||||||    
T  38859922 taaattgggcaatttttttaga-tttttttattatttgcttgcaatttcttat 38859871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 10907637 - 10907756
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||        ||    
T  10907637 cgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttaga-ttttttgat 10907735  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  10907736 tatttgcttgcaatttcttat 10907756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 5975151 - 5975040
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||| ||||||||||||||||||| ||||||||||    
T  5975151 gcccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattag 5975052  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  5975051 gcaatttcttta 5975040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 10155981 - 10156092
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| |||| |||||| ||||| ||| ||||||||||||||||||||||||||||||   |||||||| |    
T  10155981 gcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattgg 10156080  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  10156081 acaatttcttta 10156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 47022865 - 47022754
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| |||||||  ||||||||||||||||||||| | ||||||||||    
T  47022865 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattag 47022766  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  47022765 gcaatttcttta 47022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 49902629 - 49902520
Alignment:
Q  147 ccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagac 246  Q
    ||||||||  ||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||  | |    
T  49902629 ccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggc 49902530  T
Q  247 aatttcttta 256  Q
    ||||||||||    
T  49902529 aatttcttta 49902520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 42456713 - 42456624
Alignment:
Q  167 ctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| || ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  42456713 ctcgggcacctgcccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 42456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 48392371 - 48392478
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||||||||||| ||| |||||||||  |||| |||||| ||||| ||| ||||||| ||||||||||||||||||||| || |||||||| |    
T  48392371 gcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgg 48392470  T
Q  245 acaatttc 252  Q
     |||||||    
T  48392471 gcaatttc 48392478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 42517259 - 42517374
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaac----ccttataaa 240  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||    || ||||||    
T  42517259 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaa 42517358  T
Q  241 ttagacaatttcttta 256  Q
    || | |||||||||||    
T  42517359 ttgggcaatttcttta 42517374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 3346937 - 3346838
Alignment:
Q  157 cgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| ||| || ||| ||| ||||||||||| |||||  || ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  3346937 cgggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 3346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 7742744 - 7742855
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||  | || |||||| ||||| ||| ||||||| | |||||||||||||||||||||| |||||||| |    
T  7742744 gcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgg 7742843  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  7742844 gcaatttcttta 7742855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 23908391 - 23908337
Alignment:
Q  202 tgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  23908391 tgtaaattcctatgaatttcttatataaatccctataaattggacaatttcttta 23908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 30745486 - 30745396
Alignment:
Q  166 gctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||| ||||||| ||||||| |||| |||||  ||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||    
T  30745486 gctcaggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttcttta 30745396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 30766937 - 30766847
Alignment:
Q  166 gctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||| ||||||| ||||||| |||| |||||  ||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||    
T  30766937 gctcaggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttcttta 30766847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 14797014 - 14796926
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||| |||| | ||||| |||||  |||||||||||||| ||||||||||||||| || |||||||||||| | ||| |||||||    
T  14797014 gggctccgacccataatttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttaga 14796926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 14805888 - 14805800
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||| |||| | ||||| |||||  |||||||||||||| ||||||||||||||| || |||||||||||| | ||| |||||||    
T  14805888 gggctccgacccataatttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttaga 14805800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 26835472 - 26835388
Alignment:
Q  174 tccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||| || |||||| |||||  |||||||||||| |||||||||||||||||||| | ||||||||  ||||||| ||||||    
T  26835472 tccggcctaatttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttaga 26835388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 29149570 - 29149624
Alignment:
Q  202 tgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||    
T  29149570 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 29149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 37189774 - 37189697
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaattt 251  Q
    |||||||||||||||||  ||||| |||||||||||  |||||||||||||||||||| |  |||||||| ||||||||    
T  37189774 ctccggcccaaatttttg-caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 5558402 - 5558359
Alignment:
Q  215 gaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttaga 5558359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 13132011 - 13131947
Alignment:
Q  193 aattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttag 257  Q
    |||| ||||||||||||||| | ||||| ||||||||| |  |||||||| ||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttag 13131947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 44107406 - 44107451
Alignment:
Q  198 cttatgtaaattcctatgaatttcttatataaacccttataaatta 243  Q
    ||||||||||||||| ||| ||| |||||||||||| |||||||||    
T  44107406 cttatgtaaattcctctgatttttttatataaacccctataaatta 44107451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 44462512 - 44462552
Alignment:
Q  214 tgaatttcttatataaacccttataaattagacaatttctt 254  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  44462512 tgaatttcttatacaaacctctataaattagacaatttctt 44462552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 17888507 - 17888658
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||    
T  17888507 gttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataacccccta 17888606  T
Q  237 taaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    |||||| | |||||||||||||        |||||||||||||||||||||||    
T  17888607 taaattgggcaatttctttaga-tttttttattatttgcttgcaatttcttat 17888658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 31377560 - 31377440
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||  ||    
T  31377560 gttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataaccctcta 31377462  T
Q  237 taaattagacaatttctttaga 258  Q
    |||||| | |||||||||||||    
T  31377461 taaattgggcaatttctttaga 31377440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 1535934 - 1535823
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    |||||||||||  |||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  1535934 gcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 1535835  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  1535834 gcaatttcttta 1535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 35019098 - 35018988
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    |||||||||||  |||||| ||| ||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  35019098 gcccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaacccttataaattag 35019000  T
Q  245 acaatttcttta 256  Q
      ||||||||||    
T  35018999 gtaatttcttta 35018988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 46474130 - 46474044
Alignment:
Q  172 gctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||| ||||||||  ||||||||||||||    
T  46474130 gctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttaga 46474044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 25954889 - 25954802
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||| | |||||||| | |||||||||||    
T  25954889 cgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttcttta 25954802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 49284496 - 49284409
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||    
T  49284496 cgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 49284409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 11054626 - 11054507
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||||||| || |||| | | |||||||||| |||| |||||| ||||| ||||||||||| |||||||||||||||||||||||  ||    
T  11054626 gttctatggcccggcgaccccgagcactcacccgggctccggtccaa-ttttttgcaatttcttatgtaaatccctatgaatttcttatataaacctcta 11054528  T
Q  237 taaattagacaatttctttag 257  Q
    |||||| | |||| |||||||    
T  11054527 taaattgggcaatctctttag 11054507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 47084150 - 47084062
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||| ||||||||| ||||| |||||||||||| || |||||||||||||||||||| |||||||| |  ||||||||||||    
T  47084150 gggctccggcctaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttaga 47084062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 20818728 - 20818617
Alignment:
Q  147 ccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagac 246  Q
    ||||||||  ||||||| ||| ||||||| | |||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| | |||||||| | |    
T  20818728 ccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtc 20818629  T
Q  247 aatttctttaga 258  Q
    ||||| ||||||    
T  20818628 aatttttttaga 20818617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 34241132 - 34241045
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||| ||||||||||| ||||| ||| |||| || |||||||||||||||||||||||| |||||||| | |||||||||||    
T  34241132 cgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34241045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 36012151 - 36012261
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    |||||||||||  |||||| || ||||||| ||| ||||||||||| |||||  || ||||||| |||||||||||||||||||||||| |||||||| |    
T  36012151 gcccggcgaccctgggcactcg-tcgggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgg 36012249  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  36012250 gcaatttcttta 36012261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 9742538 - 9742611
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttaga 9742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 16338178 - 16338289
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||  ||| |||  ||||| |||| |||||| |||||  || ||||||||||||||||||| ||||||||| || |||||||| |    
T  16338178 gcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattgg 16338277  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  16338278 acaatttcttta 16338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 36851352 - 36851446
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataa 239  Q
    |||| |||||| ||||||| |||  ||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||| |||||||||||| |||||    
T  36851352 gcccagcgaccccgggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 33982147 - 33982054
Alignment:
Q  165 cgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||   ||| |||||||||| |||| ||| ||||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||||    
T  33982147 cgctcgggctttagcctaaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttctttaga 33982054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 10094387 - 10094455
Alignment:
Q  174 tccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaatt 242  Q
    |||||||||||||||||  |||| |||||||||||| || |||||||||||||||||||| ||||||||    
T  10094387 tccggcccaaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaatt 10094455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 50328935 - 50328848
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| ||| ||| |||||| ||||| ||| ||||||||||| | |||||||||||||||||  |||||||| |||||||||||||    
T  50328935 cgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttcttta 50328848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 19124727 - 19124789
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaac 231  Q
    |||||||||||| || |||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  19124727 cgggctccggcctaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaac 19124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 46583563 - 46583617
Alignment:
Q  202 tgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  46583563 tgtaaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 46583617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 12792228 - 12792309
Alignment:
Q  177 ggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||| ||||||  |||| |||||||||||| || |||||||||||||||||||| |||||||| | ||||| |||||||    
T  12792228 ggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttaga 12792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 322509 - 322657
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattactta-tgtaaattcctatgaa----tttcttatataaacccttataa 239  Q
    ||||||||| | ||||||| ||| ||||||  | |||||||||||| |||||  ||| ||||||||||| ||||    |||||||||||||||| |||||    
T  322509 gcccggcgatcccgggcacgcgcccgggctatgacccaaattttttgcaattttttaatgtaaattcctctgaaggaatttcttatataaacccctataa 322608  T
Q  240 attagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    ||| ||||||||||||| |        |||||||||||||||||||||||    
T  322609 attggacaatttcttta-aattttttgattatttgcttgcaatttcttat 322657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 52632633 - 52632570
Alignment:
Q  193 aattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||| ||| ||||||| ||||||||||||||||||||| || |||||||| | |||||||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 52632570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 56107516 - 56107590
Alignment:
Q  56 tatatatgtggattttagacaatttgctttagatcttaatttttctacgtagtatatttttattcatcgttacca 130  Q
    |||||||||||  ||||||||||| | |||||||||| | |||| ||| ||||||||||  ||||||||||||||    
T  56107516 tatatatgtgggatttagacaattagttttagatctttagttttgtacatagtatatttacattcatcgttacca 56107590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 35322697 - 35322812
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatt 272  Q
    ||||| ||||| ||||||  ||||  |||| |||||| || ||||| |||||||||||||  ||||||||  ||||||||||||||        ||||||    
T  35322697 ctccgacccaatttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttaga-ttttttgattatt 35322795  T
Q  273 tgcttgcaatttcttat 289  Q
    |||||||||||||||||    
T  35322796 tgcttgcaatttcttat 35322812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 5780790 - 5780830
Alignment:
Q  216 aatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||||||| ||||||||||| | |||||||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttcttta 5780830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 8456910 - 8457071
Alignment:
Q  127 accatgagcagttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttata 226  Q
    |||||| || ||||||| ||||||||||| |  |||| ||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  8456910 accatgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttata 8457009  T
Q  227 taaacccttataaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    ||| ||| |||||||| | |||||||||||||        |||||||||||||||||||||||    
T  8457010 taaccccctataaattgggcaatttctttaga-tttttttattatttgcttgcaatttcttat 8457071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 38397761 - 38397650
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  38397761 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 38397662  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  38397661 gcaatttcttta 38397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 39862452 - 39862594
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| || ||||||| |||| |||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||| |    
T  39862452 gcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgg 39862551  T
Q  245 acaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
     |||||||||||||        |||||||||||||||||||||||    
T  39862552 gcaatttctttaga--ttttttattatttgcttgcaatttcttat 39862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 6257375 - 6257486
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||| |||||||| |    
T  6257375 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgg 6257474  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  6257475 gcaatttcttta 6257486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 16618535 - 16618646
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||  |||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||| | |||||||| |    
T  16618535 gcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgg 16618634  T
Q  245 acaatttcttta 256  Q
    ||||||| ||||    
T  16618635 acaattttttta 16618646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 15631777 - 15631665
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaa-cccttataaatta 243  Q
    ||||||||||| ||||||| ||| |||||||| | ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| ||| ||||||||     
T  15631777 gcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattg 15631678  T
Q  244 gacaatttcttta 256  Q
    |||||||||||||    
T  15631677 gacaatttcttta 15631665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 37168998 - 37169109
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| |||||||  || |||||||||| ||||||||||| |||||  || ||||||| |||||||||||||||||||||||| |||||||| |    
T  37168998 gcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgg 37169097  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  37169098 gcaatttcttta 37169109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 10115299 - 10115210
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||||||| |||||| |||||  |||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||    
T  10115299 cgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttaga 10115210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 36769067 - 36769152
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||  ||| |||||| |||||||||||||    
T  36769067 ctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 10081318 - 10081195
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaatttttta--caattacttatgtaaattcctatgaatttcttatataaaccct 234  Q
    ||||||| ||||||||| | | ||||| ||| ||||||| ||||||| ||||||   ||||| ||||||||||| ||||||||||||||||||||||||     
T  10081318 gttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaatccctatgaatttcttatataaacccc 10081219  T
Q  235 tataaattagacaatttctttaga 258  Q
    |||||||| | |||||||||||||    
T  10081218 tataaattgggcaatttctttaga 10081195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 23218648 - 23218537
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||| | ||||||| ||| |||| ||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  23218648 gcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 23218549  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  23218548 gcaatttcttta 23218537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 33271263 - 33271346
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||  |||||||| |||||||||||||    
T  33271263 ctccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttcttta 33271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 29790218 - 29790296
Alignment:
Q  179 cccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttag 257  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||    
T  29790218 cccaaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttag 29790296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 25560285 - 25560435
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||| ||| ||| ||| ||  ||||||||||| ||| |||||| ||||| ||||||||||| | ||| ||||||||||||||||   ||    
T  25560285 gttctatggcccggcaaccccggccactcgtccgggctccggctcaattttttt-caatttcttatgtaaatccttataaatttcttatataaacatcta 25560383  T
Q  237 taaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    |||||| |||||||||||||||        |||||||||||||||||||||||    
T  25560384 taaattggacaatttctttaga-ttattttattatttgcttgcaatttcttat 25560435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 42119747 - 42119672
Alignment:
Q  183 aattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||  |||| ||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttaga 42119672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 29491379 - 29491483
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||| ||| ||  |||||| | |||||||| |||| ||||| |||||||||||| ||||||||||||||||| ||||| |||||||| |    
T  29491379 gcccggcgaccccggacactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattgg 29491477  T
Q  245 acaatt 250  Q
    ||||||    
T  29491478 acaatt 29491483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 10052488 - 10052576
Alignment:
Q  168 tcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||| |||| | |||||||||||   ||||||||||  ||||||||||    
T  10052488 tcgggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttcttta 10052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 27916278 - 27916206
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaatt 242  Q
    ||||| ||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||| | ||||||||    
T  27916278 gggcttcggcctaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaatt 27916206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 614397 - 614500
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatttgcttgcaattt 284  Q
    |||||| ||||| ||||||||||||||| ||||||| ||||||||| || |||||||| | |||||||||||||        ||||||||||||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttaga-tttttttattatttgcttgcaattt 614495  T
Q  285 cttat 289  Q
    |||||    
T  614496 cttat 614500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 9737980 - 9738061
Alignment:
Q  179 cccaaattttttacaattacttatgtaaa--ttcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||| |||||| ||||| ||||||||||  | ||||||||||||||||||||| || |||||||| |||||||||||||||    
T  9737980 cccaattttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttaga 9738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 6174882 - 6174796
Alignment:
Q  172 gctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaa--cccttataaattagacaatttcttta 256  Q
    ||||| |||||||||||||  |||| |||| |||||||| | |||||||||||||||||  ||| |||||||| |||||||||||||    
T  6174882 gctccagcccaaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttcttta 6174796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 11856434 - 11856345
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| |||||||| |||| |  |||| |||||||||||  || ||||||||||||||||| |  |||||||| | |||||||||||||    
T  11856434 cgggcttcggcccaagttttctgtaatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttaga 11856345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 3341111 - 3341197
Alignment:
Q  171 ggctccggcccaaattttttacaattacttatgtaaattcctatgaa-tttcttatataaacccttataaattagacaatttctttag 257  Q
    ||||| |||||||||||||| ||||| |||||||||||| || |||| ||| |||||||| ||| |||||||| |  |||||||||||    
T  3341111 ggctctggcccaaattttttgcaatttcttatgtaaatt-ctctgaatttttttatataatcccctataaattgggaaatttctttag 3341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  187 ttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaa 240  Q
    |||| ||||| ||||||||||||| | | |||||||||||||||||| ||||||    
T  33188330 ttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 42072599 - 42072480
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||| |||| |||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||    
T  42072599 gttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccta 42072500  T
Q  237 taaattagacaatttcttta 256  Q
    |||||| |||||||||||||    
T  42072499 taaattggacaatttcttta 42072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 16523280 - 16523156
Alignment:
Q  134 gcagttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccc 233  Q
    ||||||| || ||||||||||  ||| ||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||    
T  16523280 gcagttccatggcccggcgacgccggacactcgctcgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatcc 16523181  T
Q  234 ttataaattagacaatttctttaga 258  Q
     |||||||| | ||| |||||||||    
T  16523180 ctataaattgggcaacttctttaga 16523156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 33934334 - 33934445
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||| | ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||| |    
T  33934334 gcccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgg 33934433  T
Q  245 acaatttcttta 256  Q
     |||||| ||||    
T  33934434 gcaattttttta 33934445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 21525521 - 21525410
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    |||||| |||| ||||||| |||  |||||||||  |||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  21525521 gcccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 21525422  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  21525421 acaatttcttta 21525410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 22324759 - 22324648
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||| ||| ||||||| ||| |||||||||| |||||||||||  |||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  22324759 gcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 22324660  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  22324659 gcaatttcttta 22324648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 35806957 - 35806846
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||  |||||||||| ||||||||||| ||||| ||| |||||||  ||||||||||||||||||||||| |||||||| |    
T  35806957 gcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgg 35806858  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  35806857 gcaatttcttta 35806846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 19334917 - 19334835
Alignment:
Q  174 tccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||||||  ||||||||||||||||||||||    
T  19334917 tccggcccaaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttcttta 19334835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 26021558 - 26021448
Alignment:
Q  146 cccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattaga 245  Q
    ||||| |||| |||||||  || |||||||||  ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |     
T  26021558 cccggtgaccccgggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattggg 26021459  T
Q  246 caatttcttta 256  Q
     ||||||||||    
T  26021458 taatttcttta 26021448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 42014035 - 42013924
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| |||||||  |  |||| | ||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| | |||||||| |    
T  42014035 gcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgg 42013936  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  42013935 gcaatttcttta 42013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 10112186 - 10112100
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttt 255  Q
    ||||||| ||| ||| |||||| |||||  |||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||    
T  10112186 cgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttt 10112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 16591364 - 16591449
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctt 254  Q
    |||| ||||||| ||||||||| ||||| |||||||||||| ||| |||||||||||||||| |  |||||||| | |||||||||    
T  16591364 cgggttccggcctaaattttttgcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 21488225 - 21488116
Alignment:
Q  149 ggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaa 248  Q
    ||||||| ||||||| ||  ||||||| | || |||  ||||| |||| ||| ||||||||||| ||||||||||||| ||||||  ||||||| |||||    
T  21488225 ggcgaccccgggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaa 21488126  T
Q  249 tttctttaga 258  Q
    ||||||||||    
T  21488125 tttctttaga 21488116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 2824166 - 2824244
Alignment:
Q  164 ccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaatt 242  Q
    |||| ||||||||| ||  |||||||| |||||  |||||||||||||| | |||||||||||||| ||||||||||||    
T  2824166 ccgcccgggctccgacctgaattttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaatt 2824244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 43282847 - 43282913
Alignment:
Q  176 cggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaatt 242  Q
    |||| |||||||||||||||| ||||||||||||| | ||||||| ||||||||| || ||||||||    
T  43282847 cggctcaaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaatt 43282913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 16818965 - 16819035
Alignment:
Q  172 gctccggcccaaattttttacaattacttatgtaaat-tcctatgaatttcttatataaacccttataaatt 242  Q
    |||| |||||||||||||| ||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||    
T  16818965 gctctggcccaaattttttgcaatttcttttgtaaatctcct-tgaatttcttatataaacccctataaatt 16819035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 24065370 - 24065324
Alignment:
Q  211 ctatgaatttcttatataaacccttataaattagacaatttctttag 257  Q
    ||||||||||||||||||||| | |||||||| | ||||||||||||    
T  24065370 ctatgaatttcttatataaactcctataaattgggcaatttctttag 24065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 2271318 - 2271245
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| |||||||||||     |||||||||||||||||||| |||| |||||  ||||||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttaga 2271245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 17303103 - 17303223
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    ||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||        ||    
T  17303103 cgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttat 17303202  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  17303203 tatttgcttgcaatttcttat 17303223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 19334517 - 19334669
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| ||||||||||| ||| ||| | | | || | |||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||| ||    
T  19334517 gttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaaccccta 19334616  T
Q  237 taaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    |||||| |||||||||||||||        |||||||||||||||||||||||    
T  19334617 taaattggacaatttctttagattttttttattatttgcttgcaatttcttat 19334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 44164708 - 44164819
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||| |||||||| |    
T  44164708 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgg 44164807  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  44164808 gcaatttcttta 44164819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 34707278 - 34707168
Alignment:
Q  146 cccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattaga 245  Q
    |||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |     
T  34707278 cccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggg 34707179  T
Q  246 caatttcttta 256  Q
    |||||||||||    
T  34707178 caatttcttta 34707168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 29555896 - 29556015
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| |||| ||||||  |||||| ||| ||| |||||| |||| ||||| |||||| ||| |||||||||||||||||||||||||||||||| ||    
T  29555896 gttctatggcccagcgaccctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaaccccta 29555995  T
Q  237 taaattagacaatttcttta 256  Q
    |||||| |||||||||||||    
T  29555996 taaattggacaatttcttta 29556015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 10576834 - 10576725
Alignment:
Q  147 ccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagac 246  Q
    ||||||||| ||||||| | | |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| | |    
T  10576834 ccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 10576735  T
Q  247 aatttcttta 256  Q
    ||||||||||    
T  10576734 aatttcttta 10576725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 33057646 - 33057765
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||||||  ||||||||||||||        ||    
T  33057646 cgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttaga-tttttttat 33057744  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  33057745 tatttgcttgcaatttcttat 33057765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 34259681 - 34259570
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||  ||||||| ||| |||||||||| |||| |||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  34259681 gcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 34259582  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  34259581 gcaatttcttta 34259570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 29981079 - 29981189
Alignment:
Q  146 cccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattaga 245  Q
    |||||||||||||||||| ||| |||||||||| |||| | |||| ||||| ||| ||||||| ||||||||||||||||||||||   |||||||| ||    
T  29981079 cccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattgga 29981178  T
Q  246 caatttcttta 256  Q
    |||||||||||    
T  29981179 caatttcttta 29981189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 10334317 - 10334228
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||| ||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||    
T  10334317 cgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttaga 10334228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 24320428 - 24320515
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  24320428 cgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttcttta 24320515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 29238108 - 29238219
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||| ||| ||||||| ||| |||||||||| |||| |||||| ||||| ||| ||||||| |||||||||||||||||||||||| || ||||| |    
T  29238108 gcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattgg 29238207  T
Q  245 acaatttcttta 256  Q
    | ||||||||||    
T  29238208 aaaatttcttta 29238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 32876523 - 32876606
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||| ||||||||||| ||||| ||| |||| || |||||||||||||||||||||||| |||||||| |||||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttcttta 32876606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 15017896 - 15017823
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttaga 15017823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 43342533 - 43342483
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaaccctt 235  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccctt 43342483  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 41853260 - 41853205
Alignment:
Q  159 ggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctat 214  Q
    ||||| ||| |||||||||||||||||||||| ||||| ||||| |||||||||||    
T  41853260 ggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaattcctat 41853205  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 2702189 - 2702280
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatata 228  Q
    |||||| |||||||||| | || ||||  || ||||||||||||||| |||||| |||||  |||| ||||||||  ||||| |||||||||    
T  2702189 gttctaatgcccggcgagcccgtgcacttgcccgggctccggcccaagttttttgcaattttttatctaaattcccctgaatatcttatata 2702280  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 9770782 - 9770709
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| |||||||||||     |||||||||||||||||||  ||| |||| |||||||||||||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttaga 9770709  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 29846605 - 29846494
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||| ||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  29846605 gcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 29846506  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  29846505 acaatttcttta 29846494  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 42769723 - 42769834
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  42769723 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 42769822  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  42769823 gcaatttcttta 42769834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 14942012 - 14942120
Alignment:
Q  148 cggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagaca 247  Q
    |||||||| ||| ||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| | ||    
T  14942012 cggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggca 14942111  T
Q  248 atttcttta 256  Q
    |||||||||    
T  14942112 atttcttta 14942120  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 3956743 - 3956624
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| |||||| |||| ||||||| ||| ||||||||||||||||   ||| |||||  |||||||||| ||||||||||| |||||||||||| |     
T  3956743 gttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctg 3956644  T
Q  237 taaattagacaatttcttta 256  Q
    |||||| |||||||||||||    
T  3956643 taaattggacaatttcttta 3956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 14186403 - 14186514
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| | ||||| ||| || ||||||| |||||||||||  |||| ||| ||||||| |||||||||||||||||||||||| |||||||| |    
T  14186403 gcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 14186502  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  14186503 gcaatttcttta 14186514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 19181711 - 19181600
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||| ||| |||  |||||  || ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||| |    
T  19181711 gcccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgg 19181612  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  19181611 gcaatttcttta 19181600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 33009799 - 33009692
Alignment:
Q  182 aaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatttgcttgcaa 281  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||        |||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  282 tttcttat 289  Q
    ||| ||||    
T  33009699 ttttttat 33009692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 6318448 - 6318563
Alignment:
Q  171 ggctccggcccaaatttttta-caattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnatt 269  Q
    ||||||||||||| ||||||  ||||| ||||||||||| ||||||||||||||||||||| || |||||||| | |||||||||||||        |||    
T  6318448 ggctccggcccaatttttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttatt 6318547  T
Q  270 atttgcttgcaatttc 285  Q
    ||||||||||||||||    
T  6318548 atttgcttgcaatttc 6318563  T

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Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 40277253 - 40277364
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| |||||||  |  |||||||||| ||||||||||| |||||  |||||||||| ||||| ||||||||||||||| || |||||||| |    
T  40277253 gcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgg 40277352  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  40277353 gcaatttcttta 40277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 43139882 - 43139766
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatt 272  Q
    |||||| |||| |||||| ||||| ||||||||| ||||| | |||||||||||||||||| ||||||||   |||||||||||||        ||||||    
T  43139882 ctccggtccaatttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatt 43139783  T
Q  273 tgcttgcaatttcttat 289  Q
    |||||||||||||||||    
T  43139782 tgcttgcaatttcttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 14539703 - 14539782
Alignment:
Q  179 cccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||||||| ||||| ||||||||| ||||| |||||||||||||||||  | |||||||||| |||||||||||||    
T  14539703 cccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttaga 14539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 41674718 - 41674815
Alignment:
Q  192 caattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    ||||| |||||||||||  || ||||||| ||||||||||||||||||||| |||||||||||||||        | |||||||||||||||||||||    
T  41674718 caatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttat 41674815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 28321701 - 28321775
Alignment:
Q  178 gcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttc 252  Q
    |||||| |||||| ||||| |||||||||||||   ||||| ||||||||||||||||||||||| | |||||||    
T  28321701 gcccaatttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttc 28321775  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 40780171 - 40780075
Alignment:
Q  193 aattacttatgtaaattcctatgaatttcttatataaac-ccttataaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    |||| ||||||||||||||| |||||||||||||||||| || |||||||| |||||||| |||| |        |||||||||||||||||||||||    
T  40780171 aatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaattttttta-aattttttaattatttgcttgcaatttcttat 40780075  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 3597855 - 3597929
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatt 219  Q
    ||||||||||| | ||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| ||||| ||||    
T  3597855 gcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 1387312 - 1387395
Alignment:
Q  204 taaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    ||||| ||||||||||||||| |||||||| |||||||| |  ||||||||||||        |||||||||||||||||||||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttaga--ttttttattatttgcttgcaatttcttat 1387395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 2888156 - 2888091
Alignment:
Q  193 aattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||| |||||||||||  |||||||||| |||||||||| | ||||||||  ||||||| ||||||    
T  2888156 aatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttaga 2888091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 1386119 - 1386191
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaatt 209  Q
    ||||||| || || ||||| ||||||| ||| ||||||| | ||||| |||||| ||||| ||||||||||||    
T  1386119 gttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaatt 1386191  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 23685406 - 23685446
Alignment:
Q  216 aatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttattta 23685446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 19649361 - 19649481
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    ||||||||||| ||| ||||||  |||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||        ||    
T  19649361 cgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttggat 19649460  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  19649461 tatttgcttgcaatttcttat 19649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 44994933 - 44995045
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaa-cccttataaatta 243  Q
    ||||||||||| |||| || |||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||     
T  44994933 gcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattg 44995032  T
Q  244 gacaatttcttta 256  Q
    | |||||||||||    
T  44995033 ggcaatttcttta 44995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 5391628 - 5391509
Alignment:
Q  137 gttctattgcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccctta 236  Q
    ||||||| |||||||||||  |||||| ||| |||||||||  |||| ||||| |||||| ||| ||||||| |||||||||||||||||||||||| ||    
T  5391628 gttctatggcccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaaccccta 5391529  T
Q  237 taaattagacaatttcttta 256  Q
    |||||| |||||||||||||    
T  5391528 taaattggacaatttcttta 5391509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 20382679 - 20382539
Alignment:
Q  147 ccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagac 246  Q
    ||||||||| |||||||  || ||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||||||| |      
T  20382679 ccggcgaccccgggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaacccctataaattggga 20382581  T
Q  247 aatttctttagannnnnnnnattatttgcttgcaatttcttat 289  Q
    ||||||||||||        |||||||||||||||||||||||    
T  20382580 aatttctttaga-tttttttattatttgcttgcaatttcttat 20382539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 8950473 - 8950580
Alignment:
Q  149 ggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaa 248  Q
    ||||||| ||||||| ||| ||||||| || ||||||||||| ||||| ||| ||||||||||||||||||||||||||||| || |||||||| | |||    
T  8950473 ggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaa 8950572  T
Q  249 tttcttta 256  Q
    ||||||||    
T  8950573 tttcttta 8950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 13856262 - 13856151
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    |||||||||||  ||||||  || |||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| || |||||||| |    
T  13856262 gcccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgg 13856163  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  13856162 acaatttcttta 13856151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 21853360 - 21853249
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||| ||  |||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| || |||||||| |    
T  21853360 gcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgg 21853261  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  21853260 gcaatttcttta 21853249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 43347325 - 43347444
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| || ||||| | |||||||||||||        ||    
T  43347325 cgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttaga-ttttttgat 43347423  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  43347424 tatttgcttgcaatttcttat 43347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 10839369 - 10839488
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnnat 268  Q
    ||||||||| |||||||||||| ||||| |||||||||||| || |||||||||||||||||||  |||||||| | |||||||||||||        ||    
T  10839369 cgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttaga-ttttttgat 10839467  T
Q  269 tatttgcttgcaatttcttat 289  Q
    |||||||||||||||||||||    
T  10839468 tatttgcttgcaatttcttat 10839488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 32352998 - 32352899
Alignment:
Q  157 cgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| ||| |||||||||| |||| |||||| ||||| ||| | ||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  32352998 cgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 32352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 40845882 - 40845993
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||||||||||  ||| |||| |||||  |||||||||| |||||  || ||||||| |||||||||||||||||||||||| |||||||| |    
T  40845882 gcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgg 40845981  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  40845982 gcaatttcttta 40845993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 1781899 - 1781812
Alignment:
Q  171 ggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||  ||||||| | |||||||||||||    
T  1781899 ggctctggcccaaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttaga 1781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 3178841 - 3178754
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttag 257  Q
    ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| |  |||||||| | ||||||||||||    
T  3178841 gggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttag 3178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 36539791 - 36539684
Alignment:
Q  149 ggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaa 248  Q
    ||||| ||||||||  ||| |||||||||||| ||||||| | ||||| ||||||||||| ||||| |||||||||||||| ||| |||||||| | |||    
T  36539791 ggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaa 36539692  T
Q  249 tttcttta 256  Q
    ||||||||    
T  36539691 tttcttta 36539684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 54547027 - 54546954
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| |||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttaga 54546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 22845360 - 22845440
Alignment:
Q  178 gcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||||||||||| ||||| |||||||||||||   | |||||||||||||||||| |||||||| |||||||||||||||    
T  22845360 gcccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttaga 22845440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 6280352 - 6280437
Alignment:
Q  173 ctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||| ||||||| | ||||| |||||||||||| |  |||||||||||||||||||  |||||||| |||||||| ||||||    
T  6280352 ctccggcctaaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttaga 6280437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 50663296 - 50663187
Alignment:
Q  147 ccggcgacctcgggcacccgctcgggctccggcccaaa-ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattaga 245  Q
    ||||||||||| ||||| ||| ||| ||| |||| ||  |||||| ||||| |||||||| |||||| | |||||||||||||||||||||||||||  |    
T  50663296 ccggcgacctcaggcacgcgcccggtctctggcctaatgttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattgaa 50663197  T
Q  246 caatttcttt 255  Q
     |||||||||    
T  50663196 aaatttcttt 50663187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 8926906 - 8926786
Alignment:
Q  169 cgggctccggcccaaatttttta-caattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttagannnnnnnna 267  Q
    ||||||| ||||||| ||||||  ||||| | ||||||||||||| ||||||||| |||||||||| |||||||| | |||||||| ||||        |    
T  8926906 cgggctctggcccaattttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtaga-ttttttga 8926808  T
Q  268 ttatttgcttgcaatttcttat 289  Q
    ||||||||||||||||||||||    
T  8926807 ttatttgcttgcaatttcttat 8926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 27642798 - 27642726
Alignment:
Q  170 gggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaatt 242  Q
    ||||||| || |||||||||| ||||| ||||||||||| | | ||||||||||||||||| |||||||||||    
T  27642798 gggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaatccttataaatt 27642726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 23467516 - 23467570
Alignment:
Q  202 tgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||    
T  23467516 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 23467570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 46685779 - 46685859
Alignment:
Q  175 ccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||||||||| || || ||||||||||| ||  | |||||||||||||||| | |||||||| |||||||||||||    
T  46685779 ccggcccaaattttttgcattt-cttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttcttta 46685859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 48206962 - 48206904
Alignment:
Q  199 ttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||    
T  48206962 ttatgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttaga 48206904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 51336337 - 51336261
Alignment:
Q  180 ccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||| |||||| |||||  ||||||||||||   ||||||| ||||||||| | ||||||||| |||||||||||||    
T  51336337 ccaatttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttcttta 51336261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 19644346 - 19644398
Alignment:
Q  199 ttatgtaaattcctatgaatttcttatataaacccttataaattagacaattt 251  Q
    ||||||||||| |||||||||| ||||||||| | |||||||||  |||||||    
T  19644346 ttatgtaaattgctatgaattttttatataaatctttataaattgaacaattt 19644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 47889826 - 47889778
Alignment:
Q  208 ttcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||||||||||||||||  | |||||||| | |||||||||||    
T  47889826 ttcctatgaatttcttatataaattcctataaattgggcaatttcttta 47889778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 9231822 - 9231930
Alignment:
Q  148 cggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagaca 247  Q
    |||||||| ||||||| ||| |||||||||| |||| |||||| ||||| ||| |||||||  ||||||||||||||||||||||| |||||||| | ||    
T  9231822 cggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggca 9231921  T
Q  248 atttcttta 256  Q
    |||||||||    
T  9231922 atttcttta 9231930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 24694616 - 24694727
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||| |||  |||||| ||| |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| | |||||||| |    
T  24694616 gcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgg 24694715  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  24694716 gcaatttcttta 24694727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 13103109 - 13103196
Alignment:
Q  171 ggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    ||||| ||| |||||||||| |||||  |||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||    
T  13103109 ggctctggctcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttaga 13103196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 13627703 - 13627592
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| |  |||| ||  |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||||||||      
T  13627703 gcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattga 13627604  T
Q  245 acaatttcttta 256  Q
     |||||||||||    
T  13627603 gcaatttcttta 13627592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 27863836 - 27863749
Alignment:
Q  172 gctccggcccaaattttttacaatta-cttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| |||||| ||||| |||||  |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||    
T  27863836 gctccgacccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttaga 27863749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 28750636 - 28750726
Alignment:
Q  166 gctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||||| || |||| |||||| ||||| ||||||||||||| | |||||||||||||||||||| |||||||| | |||||||||||    
T  28750636 gctcgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttcttta 28750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 1727924 - 1728009
Alignment:
Q  171 ggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    |||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||||||||   |||||||||||    
T  1727924 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttta 1728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 24497565 - 24497646
Alignment:
Q  171 ggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttc 252  Q
    |||||||||||||||||||| |||||  || ||||||||||| |||||||||||||||||||| |||||||| | |||||||    
T  24497565 ggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 14309798 - 14309874
Alignment:
Q  180 ccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttcttta 256  Q
    ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| || |||||||| | |||||||||||    
T  14309798 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 14309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 34103794 - 34103735
Alignment:
Q  199 ttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||||||||||| |||||||||||||||||||| |||||||| |  ||||||||||||    
T  34103794 ttatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttaga 34103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 11084718 - 11084665
Alignment:
Q  180 ccaaattttttacaattacttatgtaaattcctatgaatttcttatataaaccc 233  Q
    |||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  11084718 ccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaaccc 11084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 34088829 - 34088788
Alignment:
Q  169 cgggctccggcccaaattttttacaattacttatgtaaattc 210  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  34088829 cgggctccggcccaaattttttgtaatttcttatgtaaattc 34088788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 54682 - 54571
Alignment:
Q  145 gcccggcgacctcgggcacccgctcgggctccggcccaaattttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattag 244  Q
    ||||||||||| ||||||  ||| |||  ||||| |||| |||||| |||||  || ||||||||||||||||||| ||||||||| || |||||||| |    
T  54682 gcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattgg 54583  T
Q  245 acaatttcttta 256  Q
    ||||||||||||    
T  54582 acaatttcttta 54571  T

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Target: scaffold0086 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 20836 - 20909
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||| |  |||||||| |||||||| ||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttaga 20909  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 34457 - 34530
Alignment:
Q  185 ttttttacaattacttatgtaaattcctatgaatttcttatataaacccttataaattagacaatttctttaga 258  Q
    |||||| ||||| ||||||||||| ||| ||||||  ||||||||| |  |||||||| |||| ||||||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttaga 34530  T

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