View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_86 (Length: 280)
Name: NF18993_high_86
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_86 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 2217921 - 2217747
Alignment:
| Q |
98 |
acggatcaaggaactttatttattagttggcgccataaattttcttataaaaatatacatttttgttactactatttttt-gattgattcatcaattttg |
196 |
Q |
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| T |
2217921 |
acggatcaaggaactttatttattagttggcgccataaattttcttataaaaatatacatttttgttactactatttttttgattgattcatcaatttcg |
2217822 |
T |
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| Q |
197 |
tccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctatctttgttgattttttaagaataat |
271 |
Q |
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| T |
2217821 |
tccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctatctttgttgattgttcaagaataat |
2217747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 2216233 - 2216182
Alignment:
| Q |
196 |
gtccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctat |
247 |
Q |
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| T |
2216233 |
gtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctat |
2216182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 2218041 - 2218004
Alignment:
| Q |
15 |
aaaatactcaatcatatataatacatgcacactcgcac |
52 |
Q |
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| T |
2218041 |
aaaatactcaatcatatataatacatgcacactcgcac |
2218004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 1513144 - 1513185
Alignment:
| Q |
117 |
ttattagttggcgccataaattttcttataaaaatatacatt |
158 |
Q |
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| T |
1513144 |
ttattatttggggccataaattttcttataaaaatatacatt |
1513185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 6298 - 6203
Alignment:
| Q |
179 |
attgattcatcaatttt-gtccatttcatc-atgtcttttgtgcttcttgtttcttaattcttcgt-cctatctttgttgattttttaagaataat |
271 |
Q |
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| T |
6298 |
attgattcatcaattttcgcccatttcatccatgtcttttgtgcttcttgtttcttaattcttcgtccctatctttgttgattgttcaagaataat |
6203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 4690 - 4639
Alignment:
| Q |
196 |
gtccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctat |
247 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4690 |
gtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctat |
4639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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