View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_88 (Length: 274)
Name: NF18993_high_88
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_88 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 42616547 - 42616806
Alignment:
| Q |
15 |
gagaagaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaactcatcatgattctctttctcttggactcaacttgacaagcaagc |
114 |
Q |
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| T |
42616547 |
gagaacaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaactcatcatgattctctttctcttggactcaacttgacaagcaagc |
42616646 |
T |
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| Q |
115 |
aaggtgataaaagcaccatgaaatcaaacacatctttgagtccatggtcacaaggtgcatcatcaacatcaagaaattttgatacctcggatgttgatac |
214 |
Q |
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| T |
42616647 |
aaggtgataaaagcaccatgaaatcaaacacatctttgagtccatggtcacaaggtgcatcatcaacatcaagaaattttgatacctcagatgttgatac |
42616746 |
T |
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| Q |
215 |
ttcacttcatctgtaaattaattagtgtatatatttatttacttatgtttgtattttgat |
274 |
Q |
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| T |
42616747 |
ttcacttcatctgtaaattaattagtgtatatatttatttacttatgtttgtattttgat |
42616806 |
T |
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