View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_91 (Length: 273)
Name: NF18993_high_91
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_91 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 41249809 - 41249962
Alignment:
| Q |
103 |
tgacatgcaacttacataataaggtttacaaattacactacaccatcactatgaaattaagatattcaaagtgtttcgacataaagtgtctaagcctagt |
202 |
Q |
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| T |
41249809 |
tgacatgcaacttacataataaggtttacaaattacactacaccatcactatgaaattaagatattcaaagtgtttcgacataaagtttcgaagcctagt |
41249908 |
T |
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| Q |
203 |
aataattaatattgagaattaaatcttagttgatcggttgtattcaactaattt |
256 |
Q |
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| T |
41249909 |
aataattaatattgagaattaaatcttagttgatcggttgtattcaactcattt |
41249962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 17088209 - 17088063
Alignment:
| Q |
103 |
tgacatgcaacttacataataaggtttacaaattacactacaccatcactatgaaattaagatattcaaagtgtttcgacataaagtgtctaagcctagt |
202 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| || |
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| T |
17088209 |
tgacatgcaacttacagaataaggtttacaaattacactacaccatcactatgaaatcaagatattcaaagtgtttcgacataaagtttcgaagcctggt |
17088110 |
T |
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| Q |
203 |
aataattaatattgagaattaaatcttagttgatcggttgtattcaa |
249 |
Q |
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| T |
17088109 |
aataattaatattgaaaattaaatcttagttgatcggttgtgttcaa |
17088063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 2817136 - 2817282
Alignment:
| Q |
103 |
tgacatgcaacttacataataaggtttacaaattacactacaccatcactatgaaattaagatattcaaagtgtttcgacataaagtgtctaagcctagt |
202 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||| | |||||||||||||| || |||||| || |
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| T |
2817136 |
tgacatgcaacttacagaataaggtttacaaactacactacaccatcactatgaaatcaagatattgaaaatatttcgacataaagtttcgaagcctggt |
2817235 |
T |
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| Q |
203 |
aataattaatattgagaattaaatcttagttgatcggttgtattcaa |
249 |
Q |
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| T |
2817236 |
aataattaatattgaaaattaaatcttagttgatcggttgtattcaa |
2817282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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