View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_high_96 (Length: 266)
Name: NF18993_high_96
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_high_96 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29648147 - 29647896
Alignment:
| Q |
1 |
cttcaaaagtcatatacatgatggtttatgattggctgatac----tgtaaatagttttacactgatagtacatcaaaattaatctcttatattaatagt |
96 |
Q |
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| T |
29648147 |
cttcaaaaatcatatacatgatggtttatgattgattgatatatagtgtaaatagttttacactgatagtacatcaaaattaatctcttatattaatagt |
29648048 |
T |
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| Q |
97 |
tacatatataatttctttataggttccaatgctaaggagcctagagtttatggcatgttactatataactgggagctataagactcaagactatggatac |
196 |
Q |
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| T |
29648047 |
tacatg----atttctttataggttccaatgctaaggagcctagagtttatggcatgttactatataactgggagctataagactcaagactatggatac |
29647952 |
T |
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| Q |
197 |
tgcatgagggtaaaacaatatagagatcttttctatgcagtgtcctttcttccata |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29647951 |
tgcatgagggtaaaacaatatagagatcttttctatgcagtgtcctttcttccata |
29647896 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 33817330 - 33817253
Alignment:
| Q |
5 |
aaaagtcatatacatgatggtttatgattggctgatactgtaaatagttttacactgatagtacatcaaaattaatct |
82 |
Q |
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|||||||||||| |||||||||||| ||||| ||| || ||||| |||||||| ||| || ||||||||||||||| |
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| T |
33817330 |
aaaagtcatataaatgatggtttataattggatgacacggtaaaaagttttactatgacagcgcatcaaaattaatct |
33817253 |
T |
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