View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_10 (Length: 551)
Name: NF18993_low_10
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 16955850 - 16956375
Alignment:
| Q |
16 |
cttataaccgtatcgtgcagaccagctgctttgtctctatccttactattccttgccatttattctttctaccttataactagtgcacaagtttattcat |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16955850 |
cttataaccgtatcgtgcagaccagttgctttgtctctatccttactattccttgccatttattctttctaccttataactagtgcacaagtttattcat |
16955949 |
T |
|
| Q |
116 |
tctatgcaacaaattcagattcttagttttttaaacttgcagctatcctttttgtataactgacgtccaatcctttaaatcaaatcacagagaattcatt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16955950 |
tctatgcaacaaattcagatttttagttttttaaacttgcagctatcctttttgtataactgacgtccaatcctttaaatcaaatcacagagaattcatt |
16956049 |
T |
|
| Q |
216 |
ttttatatctaaattctagatgtttaaactttgtaatttgtaaggcttggcttatttactataataatactgctcatcgttttactgctttattcattga |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16956050 |
ttttatatctaaatttgagatgtttaaactttgtaatttgtaaggcttggcttatttactataataatactgctcatcgttttactgctttattcattga |
16956149 |
T |
|
| Q |
316 |
ggttaacacagtttataaatattgtagttcagaaaatcaccacagatgcctattattttacaagttacttggctacactagttagcttgttcaaattgaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16956150 |
ggttaacacagtttataaatattgtagttcagaaaatcaccacagatgcctattattttacaagttacttggctacactagttagcttgttcaaattgaa |
16956249 |
T |
|
| Q |
416 |
ctgtgttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaagaaa---tctgtgg |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
16956250 |
ctgtgttcctgtcctggataatggaattgaaagtgtaatttttctat--gacattacaatttataaacatgatgggtaggaaagaagaaatactatgtgg |
16956347 |
T |
|
| Q |
513 |
ttaacatggtgatactcctacacaggtt |
540 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
16956348 |
ttaacatggtgatactcctacacaggtt |
16956375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 491
Target Start/End: Complemental strand, 16935048 - 16934978
Alignment:
| Q |
421 |
ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatggg |
491 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| | ||| | || |||||||||||||||||| |||||||| |
|
|
| T |
16935048 |
ttccagtcctggataatggaatcgaaagtgcagctttgcaatgtcatattacaatttataaatatgatggg |
16934978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 35631170 - 35631366
Alignment:
| Q |
72 |
catttattctttctaccttataactagtgcacaagtttattcattctatgcaacaaattcagattcttagttttttaaacttgcagctatcctttttgta |
171 |
Q |
| |
|
||||| ||||||| || ||||||| |||| | | ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
35631170 |
cattttttctttcaactgtataacttgtgccccattttattcattctatgcaacaaattcagctttataattttttaaacttgcagctatcctttttgta |
35631269 |
T |
|
| Q |
172 |
taactgacgtccaatcctttaaatcaaatcacagagaattcattttttatatctaaattctagatgtttaaactttgtaatttgtaaggcttggctta |
269 |
Q |
| |
|
| || ||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||| |||||||| |||| |
|
|
| T |
35631270 |
tccctactgtccaattcttcaaatcaaatcacagagaattca-tttttatatctaaattcttgatatttaaactttttaatttgcaaggcttgactta |
35631366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 529
Target Start/End: Original strand, 26633720 - 26633834
Alignment:
| Q |
416 |
ctgtgttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaa-gaaatctgtggtt |
514 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| ||| ||| | || ||||||||||| |||||||||||||| | | || ||| ||||||||||| | |
|
|
| T |
26633720 |
ctgtgttccagtcttggataatggaattgaaagtctaactttgcaatgtcatattacaatatataaacatgatggtacgtaaggaaggaaatctgtggat |
26633819 |
T |
|
| Q |
515 |
aacatggtgatactc |
529 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
26633820 |
aacattgtaatactc |
26633834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University