View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_101 (Length: 264)

Name: NF18993_low_101
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_101
NF18993_low_101
[»] scaffold0115 (1 HSPs)
scaffold0115 (20-253)||(41803-42036)
[»] chr8 (2 HSPs)
chr8 (24-57)||(16227526-16227559)
chr8 (20-57)||(24555169-24555206)
[»] chr6 (4 HSPs)
chr6 (24-57)||(14352204-14352237)
chr6 (20-53)||(14796277-14796310)
chr6 (24-57)||(24216665-24216698)
chr6 (29-57)||(23295611-23295639)
[»] chr3 (2 HSPs)
chr3 (20-57)||(19636964-19637001)
chr3 (24-56)||(15956344-15956376)
[»] scaffold0123 (1 HSPs)
scaffold0123 (25-57)||(32695-32727)
[»] chr7 (1 HSPs)
chr7 (17-57)||(18083600-18083640)
[»] chr2 (1 HSPs)
chr2 (25-57)||(18928114-18928146)


Alignment Details
Target: scaffold0115 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 41803 - 42036
Alignment:
Q  20 attcgcgtgatttatcactttaagggtttagggtgttatatttctatattctcataactgtcggtggtgaaattttagccttttccattgtttccatgtt 119  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41803 attcgcgtgatttatcactttaagggtttaaggtattatatttctatattctcataactgtcggtggtgaaattttagccttttccattgtttccatgtt 41902  T
Q  120 caaattttcctcgaccacttcctcgttcttgacatgtacctcgactctattaacttatctaattttctctgacattcttacttcccctttagccgcatct 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41903 caaattttcctcgaccaattcctcgttcttgacatgtacctcgactctattaacttatctaattttctctgacattcttacttcccctttagccgcatct 42002  T
Q  220 tgaagagtttgaaaatgatctctttcttattcat 253  Q
    ||||||||||||||||||||||||||||||||||    
T  42003 tgaagagtttgaaaatgatctctttcttattcat 42036  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 16227559 - 16227526
Alignment:
Q  24 gcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||||||||||| |||||||||||||||||||||    
T  16227559 gcgtgatttatcgctttaagggtttagggtgtta 16227526  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 24555169 - 24555206
Alignment:
Q  20 attcgcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  24555169 attcgcgtaatttatcgctttaagggtttagggtgtta 24555206  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 14352237 - 14352204
Alignment:
Q  24 gcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||| |||||||||||||||||||||||||||||    
T  14352237 gcgtaatttatcactttaagggtttagggtgtta 14352204  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 14796310 - 14796277
Alignment:
Q  20 attcgcgtgatttatcactttaagggtttagggt 53  Q
    ||||||||||||||||||||||| ||||||||||    
T  14796310 attcgcgtgatttatcactttaaaggtttagggt 14796277  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 24216698 - 24216665
Alignment:
Q  24 gcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||||||||||| |||||||||||||||||||||    
T  24216698 gcgtgatttatcgctttaagggtttagggtgtta 24216665  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 23295611 - 23295639
Alignment:
Q  29 atttatcactttaagggtttagggtgtta 57  Q
    |||||||||||||||||||||||||||||    
T  23295611 atttatcactttaagggtttagggtgtta 23295639  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 19636964 - 19637001
Alignment:
Q  20 attcgcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||||||||||||||| || ||||||||||||||||||    
T  19636964 attcgcgtgatttatcgctctaagggtttagggtgtta 19637001  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 15956376 - 15956344
Alignment:
Q  24 gcgtgatttatcactttaagggtttagggtgtt 56  Q
    |||||||||||| ||||||||||||||||||||    
T  15956376 gcgtgatttatcgctttaagggtttagggtgtt 15956344  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 32727 - 32695
Alignment:
Q  25 cgtgatttatcactttaagggtttagggtgtta 57  Q
    ||||||||||| |||||||||||||||||||||    
T  32727 cgtgatttatcgctttaagggtttagggtgtta 32695  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18083600 - 18083640
Alignment:
Q  17 atcattcgcgtgatttatcactttaagggtttagggtgtta 57  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  18083600 atcatttgtgtgatttaccactttaagggtttagggtgtta 18083640  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 18928146 - 18928114
Alignment:
Q  25 cgtgatttatcactttaagggtttagggtgtta 57  Q
    ||||||||||||||||||||||||||| |||||    
T  18928146 cgtgatttatcactttaagggtttaggatgtta 18928114  T

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