View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_102 (Length: 258)

Name: NF18993_low_102
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_102
NF18993_low_102
[»] chr8 (10 HSPs)
chr8 (16-258)||(6140215-6140457)
chr8 (16-254)||(6187062-6187300)
chr8 (16-254)||(6178272-6178510)
chr8 (42-210)||(6124401-6124569)
chr8 (19-255)||(6045688-6045924)
chr8 (25-201)||(6087118-6087294)
chr8 (19-212)||(6042052-6042245)
chr8 (33-201)||(6061948-6062116)
chr8 (26-197)||(6195340-6195511)
chr8 (133-197)||(6071164-6071228)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 6140215 - 6140457
Alignment:
Q  16 atatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactag 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6140215 atatccaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcaaggatttttatcccactag 6140314  T
Q  116 ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgcca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6140315 ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctctcgcca 6140414  T
Q  216 tgataatccattataacttgctcttagcactttttgaatttcg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6140415 tgataatccattataacttgctcttagcactttttgaatttcg 6140457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 6187062 - 6187300
Alignment:
Q  16 atatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactag 115  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| |||||||||||    
T  6187062 atatcaaaggccatcttttgtagtaagtcgtgcatttgtattctgtcgttgtttgagatggttataagagttttatcttcgaggatttctatcccactag 6187161  T
Q  116 ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgcca 215  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  6187162 ttgcattgaaaccaaaggcatctagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca 6187261  T
Q  216 tgataatccattataacttgctcttagcactttttgaat 254  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  6187262 tgataatccattataacttgttcttagcactttttgaat 6187300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 6178272 - 6178510
Alignment:
Q  16 atatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactag 115  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||    |||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  6178272 atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttctatcccactag 6178371  T
Q  116 ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgcca 215  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  6178372 ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca 6178471  T
Q  216 tgataatccattataacttgctcttagcactttttgaat 254  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  6178472 tgataatccattataacttgcttttagcactttttgaat 6178510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 6124569 - 6124401
Alignment:
Q  42 gtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgtaaccataggcatctagt 141  Q
    |||||||||||||||| |||  |  ||||||||||| ||||||||||| ||||  ||||| | ||| |||||||| ||||   | ||| | |||||||||    
T  6124569 gtcatgcatttgtattttgttgtcatttgaaatggtgataagagctttatctttaaggatatgtattccactagtagcatcaaagccacaagcatctagt 6124470  T
Q  142 atccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctct 210  Q
    || ||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||| | ||||||    
T  6124469 atacttgtaacaaaatctttattttcatctttgaaaaagaatgcaatgtctagaaacatttctttctct 6124401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 6045688 - 6045924
Alignment:
Q  19 tcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttg 118  Q
    ||||| ||||| | |||||||| ||| |||||||||||| | | ||  | |||||| || ||||||||||| ||||| ||| |   ||| ||||| |  |    
T  6045688 tcaaaagccatttgttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcag 6045787  T
Q  119 cattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatga 218  Q
    ||||| ||||| ||||||||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||   ||     
T  6045788 cattgaaaccacaggcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcggactgt 6045887  T
Q  219 taatccattataacttgctcttagcactttttgaatt 255  Q
    |||||||||||| ||| |||||| ||||| |||||||    
T  6045888 taatccattatagcttactcttaacacttcttgaatt 6045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 6087118 - 6087294
Alignment:
Q  25 gccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgt 124  Q
    ||||| ||||||||||  |||||||||||||| ||||   || ||||||| |||| ||||||||| ||||| ||||| | ||| |||||| | ||||||     
T  6087118 gccattttttgtagtaaatcatgcatttgtatcctgttgctgcttgaaattgttacaagagctttttcttcaaggatctgtattccactactagcattga 6087217  T
Q  125 aaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 201  Q
    |||||   |||   ||||||||| |||||| |||||| |||||| |||||||||||||||| ||||  |||||||||    
T  6087218 aaccacttgcactaagtatccttatgacaaaatctttattttcatctttgaaaaagaatgcgatgttcagaaacatt 6087294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 6042052 - 6042245
Alignment:
Q  19 tcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttg 118  Q
    ||||| ||||| | |||||||| ||| |||||||||||| | | ||  | |||||| || ||||||||||| ||||| ||| |   ||| ||||| |  |    
T  6042052 tcaaaagccatttgttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcag 6042151  T
Q  119 cattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcg 212  Q
    ||||| ||||| ||||||||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||    
T  6042152 cattgaaaccacaggcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcg 6042245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 6061948 - 6062116
Alignment:
Q  33 ttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgtaaccatag 132  Q
    |||||||| ||||||||||||||||||||   | |||||||| || ||||||||||| ||||  ||| | | ||| ||||   ||||| || ||||  |     
T  6061948 ttgtagtaagtcatgcatttgtattctgttggtctttgaaattgtaataagagctttatctttaaggctctctattccaccgattgcactgaaaccgcat 6062047  T
Q  133 gcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 201  Q
    ||||| ||||||||  | |||| |||||| |||||| |||||||||||||||||| ||| |||||||||    
T  6062048 gcatcaagtatcctgataacaaaatctttattttcatctttgaaaaagaatgcaacgtcaagaaacatt 6062116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 6195340 - 6195511
Alignment:
Q  26 ccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgta 125  Q
    |||| ||||| |||| |||||||||||||||| | |  || ||||| || ||||| | ||| ||||||| ||||| |  ||| || ||| |||  | | |    
T  6195340 ccattttttgcagtaagtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaa 6195439  T
Q  126 accataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaa 197  Q
    |||| | |||||||||||| ||||||||   ||||| ||||| ||| |||| ||||||||||||||||||||    
T  6195440 accacaagcatctagtatctttgtgacagactctttcttttctcctatgaagaagaatgcaatgtctagaaa 6195511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 6071164 - 6071228
Alignment:
Q  133 gcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaa 197  Q
    |||||||||||||| |  |||  |||||| ||||| ||| ||||||||||||| |||||||||||    
T  6071164 gcatctagtatcctcgcaacacaatctttcttttctcctatgaaaaagaatgctatgtctagaaa 6071228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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