View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_109 (Length: 250)
Name: NF18993_low_109
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_109 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 1984434 - 1984673
Alignment:
| Q |
11 |
caaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgttt |
110 |
Q |
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| T |
1984434 |
caaaggtcccgatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgttt |
1984533 |
T |
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| Q |
111 |
gttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
210 |
Q |
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| T |
1984534 |
gttttagcatcaaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcct |
1984633 |
T |
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| Q |
211 |
ccaccaagggtgttttgttctttagagtacttgagttttc |
250 |
Q |
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| T |
1984634 |
ccaccaagggtgttttgttctttagagtactagagttttc |
1984673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 1977513 - 1977724
Alignment:
| Q |
11 |
caaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgttt |
110 |
Q |
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| T |
1977513 |
caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt |
1977612 |
T |
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| Q |
111 |
gttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
210 |
Q |
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| T |
1977613 |
gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat |
1977712 |
T |
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| Q |
211 |
ccaccaagggtg |
222 |
Q |
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| T |
1977713 |
ccatcaaaggtg |
1977724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 1948889 - 1948696
Alignment:
| Q |
15 |
ggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttt |
114 |
Q |
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| T |
1948889 |
ggtcccgatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgttt |
1948790 |
T |
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| Q |
115 |
tagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttc |
208 |
Q |
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| T |
1948789 |
ttgcatcaaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttc |
1948696 |
T |
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