View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_110 (Length: 250)

Name: NF18993_low_110
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_110
NF18993_low_110
[»] chr5 (45 HSPs)
chr5 (23-140)||(40133383-40133500)
chr5 (13-138)||(36860423-36860548)
chr5 (13-139)||(21088816-21088942)
chr5 (23-139)||(36866761-36866877)
chr5 (23-110)||(699178-699265)
chr5 (13-136)||(5837557-5837680)
chr5 (13-123)||(1429195-1429305)
chr5 (13-123)||(5112363-5112473)
chr5 (13-138)||(8741936-8742062)
chr5 (23-136)||(26268076-26268189)
chr5 (24-136)||(27318548-27318660)
chr5 (23-138)||(19119859-19119974)
chr5 (23-98)||(30969384-30969459)
chr5 (32-142)||(15724486-15724596)
chr5 (23-108)||(9200263-9200348)
chr5 (28-147)||(22255172-22255292)
chr5 (23-139)||(5829896-5830016)
chr5 (28-139)||(7693229-7693340)
chr5 (23-106)||(24886136-24886219)
chr5 (28-138)||(39572819-39572929)
chr5 (13-110)||(22019660-22019757)
chr5 (13-110)||(22980821-22980918)
chr5 (28-140)||(23116287-23116399)
chr5 (23-106)||(14919588-14919671)
chr5 (28-98)||(17158095-17158165)
chr5 (23-137)||(32563150-32563264)
chr5 (23-136)||(25500986-25501099)
chr5 (23-140)||(35511537-35511654)
chr5 (43-147)||(13956425-13956529)
chr5 (29-137)||(31705677-31705785)
chr5 (43-138)||(12910350-12910445)
chr5 (23-136)||(7208923-7209037)
chr5 (28-138)||(22974147-22974257)
chr5 (28-110)||(31786711-31786793)
chr5 (23-96)||(11898044-11898117)
chr5 (21-138)||(38528294-38528411)
chr5 (29-77)||(6824547-6824595)
chr5 (13-77)||(25668710-25668774)
chr5 (23-134)||(8436970-8437081)
chr5 (23-138)||(35826543-35826658)
chr5 (52-123)||(35933917-35933988)
chr5 (13-110)||(27330334-27330429)
chr5 (28-98)||(28416592-28416662)
chr5 (31-77)||(42342794-42342840)
chr5 (61-141)||(16004474-16004555)
[»] chr6 (15 HSPs)
chr6 (13-136)||(21017171-21017294)
chr6 (28-138)||(3880013-3880123)
chr6 (23-138)||(8513233-8513348)
chr6 (28-138)||(4318897-4319007)
chr6 (28-138)||(5627391-5627501)
chr6 (28-144)||(1945827-1945944)
chr6 (13-136)||(6088910-6089033)
chr6 (23-98)||(33893071-33893146)
chr6 (28-98)||(15491655-15491725)
chr6 (20-123)||(29182178-29182281)
chr6 (28-106)||(7055289-7055367)
chr6 (28-140)||(6091257-6091368)
chr6 (13-136)||(30353417-30353540)
chr6 (21-147)||(7235101-7235227)
chr6 (23-123)||(18498448-18498549)
[»] chr7 (38 HSPs)
chr7 (13-139)||(4582893-4583019)
chr7 (23-138)||(43686016-43686130)
chr7 (23-139)||(37109846-37109962)
chr7 (28-138)||(7334769-7334879)
chr7 (13-138)||(32432432-32432552)
chr7 (13-138)||(32821114-32821239)
chr7 (30-138)||(17842664-17842772)
chr7 (13-137)||(43925081-43925202)
chr7 (23-110)||(29173543-29173630)
chr7 (28-137)||(38258521-38258630)
chr7 (23-139)||(12165726-12165842)
chr7 (13-140)||(5657542-5657669)
chr7 (28-138)||(18797304-18797412)
chr7 (28-123)||(23111180-23111275)
chr7 (23-110)||(26980326-26980413)
chr7 (23-106)||(27421450-27421533)
chr7 (23-106)||(30055534-30055617)
chr7 (13-98)||(6546534-6546619)
chr7 (13-138)||(21991611-21991736)
chr7 (24-104)||(9355898-9355978)
chr7 (9-139)||(27283718-27283848)
chr7 (23-123)||(31520794-31520894)
chr7 (13-140)||(8861258-8861385)
chr7 (9-147)||(12390687-12390825)
chr7 (13-123)||(22687229-22687339)
chr7 (28-106)||(38053493-38053571)
chr7 (32-96)||(34362228-34362292)
chr7 (23-123)||(37347012-37347112)
chr7 (22-140)||(10359284-10359402)
chr7 (28-110)||(24211744-24211826)
chr7 (13-106)||(31579125-31579223)
chr7 (13-122)||(44413440-44413550)
chr7 (9-123)||(48928621-48928734)
chr7 (22-98)||(10481619-10481696)
chr7 (9-110)||(48928354-48928454)
chr7 (72-136)||(8299192-8299256)
chr7 (29-138)||(26524404-26524513)
chr7 (43-98)||(37704182-37704238)
[»] chr2 (30 HSPs)
chr2 (13-144)||(4166916-4167047)
chr2 (28-141)||(33551079-33551192)
chr2 (23-110)||(13711492-13711579)
chr2 (9-138)||(4264151-4264280)
chr2 (23-123)||(39167451-39167551)
chr2 (23-106)||(27350026-27350109)
chr2 (23-136)||(3176941-3177054)
chr2 (23-140)||(19313850-19313967)
chr2 (28-139)||(44913661-44913772)
chr2 (28-123)||(26357592-26357687)
chr2 (23-106)||(37905740-37905823)
chr2 (28-110)||(19289416-19289498)
chr2 (28-142)||(35958905-35959019)
chr2 (13-77)||(5881600-5881664)
chr2 (23-106)||(43770927-43771010)
chr2 (23-105)||(4478402-4478484)
chr2 (28-110)||(11366474-11366556)
chr2 (28-138)||(17071830-17071940)
chr2 (53-123)||(18494386-18494456)
chr2 (23-105)||(43648333-43648415)
chr2 (13-138)||(29242216-29242341)
chr2 (23-80)||(33902124-33902181)
chr2 (23-136)||(36641988-36642101)
chr2 (28-110)||(41463943-41464025)
chr2 (28-77)||(4763692-4763741)
chr2 (29-138)||(17054190-17054299)
chr2 (23-108)||(31570822-31570907)
chr2 (23-96)||(33660456-33660529)
chr2 (13-98)||(33709310-33709395)
chr2 (23-107)||(19424716-19424800)
[»] chr8 (27 HSPs)
chr8 (23-123)||(9864162-9864262)
chr8 (23-144)||(12876102-12876223)
chr8 (13-138)||(36695032-36695157)
chr8 (21-138)||(40862418-40862536)
chr8 (28-139)||(10555283-10555394)
chr8 (13-140)||(6098584-6098711)
chr8 (9-139)||(13307621-13307751)
chr8 (23-141)||(23854507-23854625)
chr8 (23-138)||(1204926-1205041)
chr8 (23-138)||(16446951-16447066)
chr8 (28-123)||(37970600-37970695)
chr8 (28-110)||(8803891-8803973)
chr8 (28-138)||(41362517-41362624)
chr8 (28-106)||(30654664-30654742)
chr8 (13-138)||(38643977-38644102)
chr8 (23-138)||(1150181-1150296)
chr8 (23-106)||(11727055-11727138)
chr8 (23-106)||(31933962-31934045)
chr8 (23-138)||(34952107-34952222)
chr8 (13-123)||(465856-465966)
chr8 (28-138)||(43643676-43643786)
chr8 (23-139)||(5300022-5300138)
chr8 (23-138)||(16222862-16222977)
chr8 (23-138)||(27082914-27083029)
chr8 (23-138)||(34894966-34895081)
chr8 (28-77)||(1149713-1149762)
chr8 (40-98)||(43025741-43025799)
[»] chr3 (35 HSPs)
chr3 (23-123)||(34132941-34133041)
chr3 (23-144)||(4015445-4015566)
chr3 (13-138)||(35844317-35844442)
chr3 (23-123)||(24489032-24489132)
chr3 (13-110)||(29099374-29099471)
chr3 (23-123)||(3655272-3655372)
chr3 (23-139)||(51213051-51213167)
chr3 (13-136)||(46297822-46297945)
chr3 (13-106)||(44186561-44186654)
chr3 (28-135)||(22446140-22446247)
chr3 (23-139)||(37203057-37203173)
chr3 (25-105)||(47481546-47481626)
chr3 (23-138)||(40552329-40552444)
chr3 (31-110)||(54505827-54505906)
chr3 (28-106)||(2007956-2008034)
chr3 (28-138)||(48354932-48355042)
chr3 (23-144)||(21193591-21193712)
chr3 (23-139)||(37157698-37157813)
chr3 (23-106)||(4761719-4761802)
chr3 (13-72)||(11466881-11466940)
chr3 (28-106)||(3362276-3362354)
chr3 (13-110)||(7327542-7327640)
chr3 (28-106)||(20373371-20373449)
chr3 (28-77)||(21009877-21009926)
chr3 (9-98)||(33378841-33378930)
chr3 (26-99)||(43975961-43976034)
chr3 (48-123)||(2613896-2613971)
chr3 (23-138)||(26941330-26941445)
chr3 (52-141)||(44891495-44891583)
chr3 (13-77)||(14586730-14586794)
chr3 (23-123)||(40935997-40936097)
chr3 (23-67)||(42506145-42506189)
chr3 (72-138)||(55343403-55343469)
chr3 (23-123)||(11357434-11357535)
chr3 (54-98)||(33698219-33698263)
[»] chr4 (39 HSPs)
chr4 (13-136)||(17167715-17167838)
chr4 (13-136)||(17173292-17173415)
chr4 (33-138)||(4205116-4205221)
chr4 (27-136)||(27396618-27396727)
chr4 (28-137)||(37775670-37775779)
chr4 (13-140)||(49375964-49376092)
chr4 (28-138)||(9139247-9139355)
chr4 (13-138)||(35021121-35021246)
chr4 (28-138)||(34361592-34361702)
chr4 (22-140)||(39397916-39398034)
chr4 (21-110)||(54499332-54499422)
chr4 (23-108)||(19089549-19089634)
chr4 (13-110)||(32592121-32592218)
chr4 (23-123)||(25701153-25701253)
chr4 (13-136)||(36493774-36493897)
chr4 (13-140)||(55241190-55241317)
chr4 (13-123)||(30002710-30002820)
chr4 (13-110)||(7703545-7703642)
chr4 (28-138)||(25184113-25184223)
chr4 (28-138)||(32912681-32912791)
chr4 (28-106)||(37287766-37287844)
chr4 (13-106)||(879634-879727)
chr4 (23-136)||(47253751-47253863)
chr4 (23-123)||(34948193-34948293)
chr4 (23-67)||(37663837-37663881)
chr4 (23-110)||(4598021-4598107)
chr4 (13-96)||(23761114-23761197)
chr4 (13-110)||(29584286-29584381)
chr4 (13-123)||(35025674-35025784)
chr4 (28-138)||(50697242-50697352)
chr4 (53-138)||(4396326-4396411)
chr4 (23-140)||(28003082-28003199)
chr4 (28-77)||(50764791-50764840)
chr4 (23-142)||(19440744-19440864)
chr4 (23-123)||(46888253-46888353)
chr4 (31-138)||(3042611-3042718)
chr4 (23-138)||(55477987-55478106)
chr4 (28-84)||(4934303-4934360)
chr4 (13-98)||(33816619-33816704)
[»] scaffold0002 (2 HSPs)
scaffold0002 (23-138)||(134-249)
scaffold0002 (27-115)||(94457-94545)
[»] chr1 (34 HSPs)
chr1 (13-136)||(238568-238690)
chr1 (23-141)||(15752022-15752140)
chr1 (23-123)||(47279200-47279300)
chr1 (23-110)||(11742415-11742502)
chr1 (28-139)||(38823209-38823320)
chr1 (28-138)||(1547283-1547393)
chr1 (28-106)||(10922755-10922833)
chr1 (28-110)||(32267058-32267140)
chr1 (28-142)||(42721031-42721145)
chr1 (13-98)||(48620673-48620758)
chr1 (23-138)||(2959744-2959859)
chr1 (28-115)||(9903124-9903211)
chr1 (23-138)||(18422647-18422762)
chr1 (23-109)||(51128884-51128970)
chr1 (13-140)||(27267254-27267378)
chr1 (23-115)||(28564846-28564938)
chr1 (51-110)||(7079167-7079226)
chr1 (23-138)||(10182073-10182188)
chr1 (23-110)||(30254448-30254534)
chr1 (28-106)||(23999375-23999453)
chr1 (13-138)||(15382929-15383054)
chr1 (23-80)||(21289726-21289783)
chr1 (13-98)||(32216091-32216176)
chr1 (23-123)||(37451297-37451397)
chr1 (28-110)||(27533050-27533132)
chr1 (9-98)||(3534968-3535057)
chr1 (28-110)||(37618964-37619048)
chr1 (13-138)||(39393379-39393504)
chr1 (28-123)||(47682564-47682658)
chr1 (28-147)||(3309135-3309253)
chr1 (28-138)||(16415641-16415752)
chr1 (23-138)||(34012442-34012557)
chr1 (28-138)||(19899839-19899949)
chr1 (23-139)||(30327017-30327133)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-136)||(146091-146199)
[»] scaffold0291 (1 HSPs)
scaffold0291 (23-110)||(7915-8002)
[»] scaffold0061 (1 HSPs)
scaffold0061 (23-109)||(43986-44072)
[»] scaffold0017 (1 HSPs)
scaffold0017 (23-109)||(154715-154801)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-98)||(42388-42439)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 40133500 - 40133383
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||    
T  40133500 gactgaacttttgatgccattgtacaaatagtggggtgttactcacaacatttttgatactataatgttaacttcaccacaaaagtcattttcgtgactt 40133401  T
Q  123 cccagtagaattttccat 140  Q
    | |  |||||||||||||    
T  40133400 caccatagaattttccat 40133383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 36860548 - 36860423
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||| |    
T  36860548 atactatggggactgaacttttgatgtcattgtacaaacagtggggtgttactcacaacattttttatactatagtgttaacttcaccagaaaaatcatt 36860449  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||||||||||| |  |||||||||||    
T  36860448 ttcgtgacttcaccatagaattttcc 36860423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 21088816 - 21088942
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaac-aaaaaagtcaa 111  Q
    |||||| || |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | | ||||||||| | ||||||||||     
T  21088816 atactatggggactgaacttttgatgtcattgtacaaacagtggggtgtcactcacaacattttttatactacagt-ttaacttcaccaaaaaaagtcat 21088914  T
Q  112 tttcgtgacttcccagtagaattttcca 139  Q
    ||||||||||||   |||||||||||||    
T  21088915 tttcgtgacttcatcgtagaattttcca 21088942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 36866877 - 36866761
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||| |||| ||||||||||| || |||| ||| |||||||||||    
T  36866877 gactgaacttttgatgccattgtacaaacagtggggtgttactcacaatatttttgatattatagtgttaacttcaccagaaaaatcattttcgtgactt 36866778  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  36866777 caccatagaattttcca 36866761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 699265 - 699178
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||| | ||||||||| ||||| ||||||||||| || ||||||||    
T  699265 gactgaacttttgatgtcactgtacaaacagtggggtgttactcactagattttttatgctatagtgttaacttcatcagaaaagtca 699178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5837680 - 5837557
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||| || |||||||| |    
T  5837680 atactatggagactgaaattttgatgtcactgtacaaacagtggggtgttactcacaacacttttgatgctatagtgttaccttcaccagaaaagtcatt 5837581  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
     || ||| ||| | ||||||||||    
T  5837580 ctcatgaattcaccgtagaatttt 5837557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 1429195 - 1429305
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| || |||||||| || |||||||| ||||||||||||||||| | |||||| || ||||| ||||||||||| ||||| ||||| |    
T  1429195 atactatggagactgaatttttgatgccagtgtacaaacagtggggtgttactcactatatttttgatgctatagtgttaacttcaccaaaagagtcatt 1429294  T
Q  113 ttcgtgacttc 123  Q
    ||| |||||||    
T  1429295 ttcatgacttc 1429305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 5112363 - 5112473
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| || |||||||| ||||||||||||||||| | |||||||||  |||| | ||||||||| ||||||||||| |    
T  5112363 atactatggggactgaacttttgatgccactgtacaaacagtggggtgttactcactatattttttatgttatagtattaacttcaccaaaaaagtcatt 5112462  T
Q  113 ttcgtgacttc 123  Q
    ||| |||||||    
T  5112463 ttcatgacttc 5112473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 8741936 - 8742062
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtgggg-tgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaa 111  Q
    |||||| ||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||| |||| || ||||| ||||||||||| || ||||||||     
T  8741936 atactatggagactgaacttttgatgccattgtacaaacaatgggggtgttactcacaacacttttgatgctatagtgttaacttcaccagaaaagtcat 8742035  T
Q  112 tttcgtgacttcccagtagaattttcc 138  Q
    | || ||||||| |  |||||||||||    
T  8742036 tctcatgacttcaccatagaattttcc 8742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 26268189 - 26268076
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||||||||||||||||||  ||||||| |||||||||||||||| |||| |||| || ||||| ||||||||||| || |||| ||| | || ||||||    
T  26268189 gactaaacttttgatgtcaccgtacaaacagtggggtgttactcaaaacacttttgatgctatagtgttaacttcaccagaaaaatcattctcatgactt 26268090  T
Q  123 cccagtagaatttt 136  Q
    | | ||||||||||    
T  26268089 cactgtagaatttt 26268076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 27318548 - 27318660
Alignment:
Q  24 actaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||  | || ||||||||||| || |||| ||| | || |||||||    
T  27318548 actaaacttttgatgtcattgtacaaacagtggtgtgttactcactacattttttatgttttagtgttaacttcaccagaaaaatcattctcatgacttc 27318647  T
Q  124 ccagtagaatttt 136  Q
     | || |||||||    
T  27318648 accgttgaatttt 27318660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 19119974 - 19119859
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| ||||||||||||||  ||||| |||| || ||||| ||||||||||| || |||||||| | || ||||||    
T  19119974 gactgaacttttgatgtcactgtacaaacagtggggtgttactagcaacacttttgatgctatagtgttaacttcaccacaaaagtcattctcatgactt 19119875  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  19119874 caccatagaattttcc 19119859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 30969384 - 30969459
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||  |||| |||||||||||    
T  30969384 gactgaacttttgatgtcattgtataaatagtggggtgttactcacaacacttttgatgttatagtgttaacttca 30969459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 15724596 - 15724486
Alignment:
Q  32 tttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtaga 131  Q
    ||||||||||||||| ||| ||||||||||||||||||| | |||| ||  |||| ||||||||||| ||||||||||| | || | ||||| |  ||||    
T  15724596 tttgatgtcattgtataaacagtggggtgttactcacaaaacttttgatgttatagtgttaacttcaccaaaaaagtcattctcataacttcaccataga 15724497  T
Q  132 attttccatat 142  Q
    |||||||||||    
T  15724496 attttccatat 15724486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 9200348 - 9200263
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||| |||| ||  |||| ||||||||||| || ||||||    
T  9200348 gactaaacttttgatgtcactgtacaaactgtggggtgttactcacaacacttttgatgttatagtgttaacttcaccagaaaagt 9200263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 22255292 - 22255172
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacatttttt-atactataatgttaacttcaacaaaaaagtcaatttcgtgacttccca 126  Q
    ||||||||||| |||||||||||  |||||||||||||||  ||||||||| ||  |||||||||||||||| ||||||||| | |||  ||||||| |     
T  22255292 aacttttgatgccattgtacaaacggtggggtgttactcattacattttttgatgttataatgttaacttcaccaaaaaagttatttttatgacttcacc 22255193  T
Q  127 gtagaattttccatatttaaa 147  Q
    ||||| |||||| | ||||||    
T  22255192 gtagagttttccttctttaaa 22255172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 5830016 - 5829896
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttat----actataatgttaacttcaacaaaaaagtcaatttcgtg 118  Q
    ||||||||||||||||||||||||||||  || ||||||||||||  |||||||||||    | |||||||||||||||| ||||||| ||| |||   |    
T  5830016 gactaaacttttgatgtcattgtacaaacggtagggtgttactcattacattttttatgttaattataatgttaacttcaccaaaaaaatcatttttacg 5829917  T
Q  119 acttcccagtagaattttcca 139  Q
    ||||| |  ||||||||||||    
T  5829916 acttcaccctagaattttcca 5829896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 7693340 - 7693229
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| || |||||||| |||||| |||||||||||||| |||| ||  |||| ||||||||||| || |||||||| |||  ||||||| |      
T  7693340 aacttttgatgccactgtacaaacagtgggatgttactcacaacacttttgatgttatagtgttaacttcaccagaaaagtcattttaatgacttcacca 7693241  T
Q  128 tagaattttcca 139  Q
    ||||||||||||    
T  7693240 tagaattttcca 7693229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 24886219 - 24886136
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  |||||||| ||  |||| | ||||||||| |||||||    
T  24886219 gactgaacttttgatgtcattgtacaaacagtggggtgttactcattacatttttgatgttatagtattaacttcaccaaaaaa 24886136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 39572929 - 39572819
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||| || ||||| ||||| |||||||||||||||||||||||| |||| | ||||||| |  | |||||||| | || ||||||| |      
T  39572929 aacttttgatgtcactgcacaaacagtggagtgttactcacaacattttttatattatagtattaacttaactagaaaagtcattctcatgacttcacca 39572830  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  39572829 tagaattttcc 39572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 22019757 - 22019660
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| |||||||||||||| | |||||| | ||||||||||||||||||| |||| || ||||| | ||||||||| || ||||||||    
T  22019757 atactaaggggacttaacttttgatgtcactatacaaacaatggggtgttactcacaacacttttgattctatagttttaacttcaccagaaaagtca 22019660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 22980918 - 22980821
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| |||||||||||||||||  |||| |||||||| ||||||||   |||||| |||||||| ||||||||||| || ||||||||    
T  22980918 atactatggggactgaacttttgatgtcattgctcaaacagtggggtattactcactgtatttttgatactatagtgttaacttcaccagaaaagtca 22980821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 23116287 - 23116399
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||  || |||||||| ||||||||| ||||||| ||| |||| ||  ||||||||||||||||  |||||||||| |||| |||| || |      
T  23116287 aacttttgattccactgtacaaacagtggggtgctactcactacagttttgatgttataatgttaacttcataaaaaaagtcattttcatgacgtcacca 23116386  T
Q  128 tagaattttccat 140  Q
    |||||||||||||    
T  23116387 tagaattttccat 23116399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 14919588 - 14919671
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| |||||||||||||||| || ||| |||| |||||||||||  |||||||| ||  |||||||||||||||| |||||||    
T  14919588 gactgaacttttgatgtcattatataaacagtgaggtgttactcattacatttttgatgttataatgttaacttcatcaaaaaa 14919671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 17158095 - 17158165
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||||||||||||||||||||  |||| ||||||||||  |||||||||||  |||| |||||||||||    
T  17158095 aacttttgatgtcattgtacaaacggtggagtgttactcattacattttttatgttatagtgttaacttca 17158165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 32563264 - 32563150
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||| | ||||| ||||||||||||||| |||| ||  |||| ||||||||||| || |||| ||| |||  ||||||    
T  32563264 gactgaacttttgatgtcactgtacagacagtggagtgttactcacaacacttttgatgttatagtgttaacttcatcagaaaaatcattttaatgactt 32563165  T
Q  123 cccagtagaattttc 137  Q
    | |  ||||||||||    
T  32563164 caccatagaattttc 32563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 25500986 - 25501099
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||| |||| ||||||| |||||||| |||| || ||||| ||||||||| | || |||||||| | || ||||||    
T  25500986 gacttaacttttgatggcagtgtacaaacagtgaggtgttattcacaacacttttgatgctatagtgttaactttaccagaaaagtcattctcatgactt 25501085  T
Q  123 cccagtagaatttt 136  Q
    | |  |||||||||    
T  25501086 caccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 35511537 - 35511654
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| | |||||| ||||| ||||||||||| ||| | || ||  |||||||||||||||| || ||| |||| |||| ||||||    
T  35511537 gactgaacttttgatgtcactttacaaacagtggagtgttactcactacagtgttgatgttataatgttaacttcatcagaaacgtcattttcatgactt 35511636  T
Q  123 cccagtagaattttccat 140  Q
    | |  ||| |||||||||    
T  35511637 caccataggattttccat 35511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 13956425 - 13956529
Alignment:
Q  43 tgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaattttccatat 142  Q
    |||||||| |||| |||||||||||| ||| |||| ||  |||| |||||||||||  | |||||||| |||| ||||||| | |||||||||||| ||     
T  13956425 tgtacaaacagtgaggtgttactcactacagttttgatgttatagtgttaacttcatgagaaaagtcattttcatgacttcaccgtagaattttccttaa 13956524  T
Q  143 ttaaa 147  Q
    |||||    
T  13956525 ttaaa 13956529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 31705677 - 31705785
Alignment:
Q  29 acttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagt 128  Q
    ||||||||||||||||||||||  || |||||||||||   |||||||| ||  |||| ||||||||||| ||||||| ||| |||  ||||||| |  |    
T  31705677 acttttgatgtcattgtacaaacggtagggtgttactcgttacatttttgatgttatagtgttaacttcaccaaaaaaatcatttttatgacttcaccat 31705776  T
Q  129 agaattttc 137  Q
    |||||||||    
T  31705777 agaattttc 31705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 12910445 - 12910350
Alignment:
Q  43 tgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaattttcc 138  Q
    |||||||| ||||||||||||| ||| | |||||| ||  |||| | ||||||||| ||||||||||| |||| ||||||| |  |||||||||||    
T  12910445 tgtacaaacagtggggtgttacgcactatatttttgatgttatagttttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcc 12910350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 7208923 - 7209037
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaac-aaaaaagtcaatttcgtgact 121  Q
    |||| |||||||||||||| ||||||||  || |||||||||||    ||||||||||  || ||||||||||||| | |||||||||| |||  |||||    
T  7208923 gactgaacttttgatgtcaatgtacaaacggtagggtgttactcgttgcattttttatgttacaatgttaacttcaccaaaaaaagtcatttttatgact 7209022  T
Q  122 tcccagtagaatttt 136  Q
    || | ||||||||||    
T  7209023 tcaccgtagaatttt 7209037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 22974147 - 22974257
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||| |||||||||| |||||| |||||||||  || ||||| ||  |||| ||||||||||| ||||||| ||| | || | ||||| |      
T  22974147 aacttttgatgttattgtacaaacagtgggatgttactcattacttttttgatgttatagtgttaacttcaccaaaaaaatcattctcataacttcacca 22974246  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  22974247 tagaattttcc 22974257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 31786711 - 31786793
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||| || |||||||| |||||||   | ||||| |||||||| || ||||| ||||||||||| |||||||||||    
T  31786711 aacttttgatgccactgtacaaacagtggggcagtgctcactacatttttcatgctatagtgttaacttcaccaaaaaagtca 31786793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 11898117 - 11898044
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaactt 96  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||   || |||| || ||||||| |||||||    
T  11898117 gactaaacttttgatgtcactgtacaactagtagggtgttactcagtgcacttttgatgctataatattaactt 11898044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 38528294 - 38528411
Alignment:
Q  21 gagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgac 120  Q
    |||||| |||||||||||||| |||| ||| | ||||||||||||||  ||| |||| ||  |||| ||||||||||| || ||||  || |||| ||||    
T  38528294 gagactgaacttttgatgtcactgtataaacaatggggtgttactcattacaattttgatgttatagtgttaacttcatcagaaaaaccattttcatgac 38528393  T
Q  121 ttcccagtagaattttcc 138  Q
    ||| |  |||||||||||    
T  38528394 ttcaccatagaattttcc 38528411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 6824547 - 6824595
Alignment:
Q  29 acttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  6824547 acttttgatgtcactgtacaaacagtggagtgttactcacaacactttt 6824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 25668774 - 25668710
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    |||||| || |||| ||||||||||| || ||| |||| ||||||||||||||||||||| ||||    
T  25668774 atactaaggggactgaacttttgatgccactgttcaaacagtggggtgttactcacaacactttt 25668710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 8437081 - 8436970
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| | |||| |||||||||| ||| |||  |  ||||| |||||| |||| ||||||| ||| | || ||||||    
T  8437081 gactgaacttttgatgtcactgtacaaacaatgggatgttactcactacactttggaagctatagtgttaatttcaccaaaaaaatcattctcatgactt 8436982  T
Q  123 cccagtagaatt 134  Q
    | || |||||||    
T  8436981 cacattagaatt 8436970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 35826543 - 35826658
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| | ||  ||||||||||  |||||||| ||  |||| | |||||||||  |||||||||| | || ||||||    
T  35826543 gactgaacttttgatgtcactgtacaaacaatgaagtgttactcagtacatttttgatgttatagtattaacttcacaaaaaaagtcattatcatgactt 35826642  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  35826643 caccatagaattttcc 35826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 35933988 - 35933917
Alignment:
Q  52 agtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    |||| |||||||||||||||| |||| || ||||| ||||||||||| ||||||| ||| | || |||||||    
T  35933988 agtgaggtgttactcacaacacttttgattctatagtgttaacttcatcaaaaaaatcattctcatgacttc 35933917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27330429 - 27330334
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| | ||||| ||||||||||| ||||||||||| |||  |||||||||  ||||| |||| ||  |||| ||||||||||| || ||||||||    
T  27330429 atactatgaagactgaacttttgatgccattgtacaaacagtaaggtgttact--caacacttttgatgttatagtgttaacttcaccagaaaagtca 27330334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 28416592 - 28416662
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||||||||  || |||||||| |||||| |||||||||||| | |||| ||| |||| |||||||||||    
T  28416592 aacttttgattccactgtacaaacagtgggatgttactcacaatacttttgatattatagtgttaacttca 28416662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 42342840 - 42342794
Alignment:
Q  31 ttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    ||||||||||| |||| ||| |||||||| |||||||||||||||||    
T  42342840 ttttgatgtcactgtataaacagtggggtattactcacaacattttt 42342794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 16004474 - 16004555
Alignment:
Q  61 ttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatt-tcgtgacttcccagtagaattttccata 141  Q
    ||||||||||||||||| ||  |||| ||||||||||| || ||||||||||| || ||||||  |  ||||||||||||||    
T  16004474 ttactcacaacatttttgatgttatagtgttaacttcaccagaaaagtcaattctcatgactttaccatagaattttccata 16004555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 21017171 - 21017294
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |    
T  21017171 atactatggggactgaacttttgatgccattgtacaaataatggggtgttactcacaacattttttatactacaatgttaacttcaccaaaaaagtcatt 21017270  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||||||||||| | ||| ||||||    
T  21017271 ttcgtgacttcaccgtataatttt 21017294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 3880013 - 3880123
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||| || |||||||| | |||||||||| |      
T  3880013 aacttttgatgtcattgtacaaacagtagggtgttactcacaacacttttgatactataatgttaacttcaccagaaaagtcattctcgtgacttcacca 3880112  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  3880113 tagaattttcc 3880123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 8513348 - 8513233
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| ||| |||| ||||||||||| || |||||||| | || ||||||    
T  8513348 gactgaacttttgatgtcactgtacaaacagtggggtgttactcacaacacttttgatattatagtgttaacttcaccagaaaagtcattctcatgactt 8513249  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  8513248 caccatagaattttcc 8513233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 4318897 - 4319007
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||| |||||||| |||||||||||||||| |||| |||| ||  |||| ||||||||||| ||||||||||| | || ||||||| |      
T  4318897 aacttttgatgtcactgtacaaacagtggggtgttactcataacacttttgatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcacca 4318996  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  4318997 tagaattttcc 4319007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 5627501 - 5627391
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||||| |||||||||||||||||||||||  | |||||||||  |||| ||||||||||| ||||||||||| | |  ||||||| |      
T  5627501 aacttttgatgtcattctacaaatagtggggtgttactcattatattttttatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcacct 5627402  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  5627401 tagaattttcc 5627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 1945944 - 1945827
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaac-aaaaaagtcaatttcgtgacttccca 126  Q
    |||||||||||||||| |||||| ||||||||||||||||  |||||||| ||  |||| ||||||||||| | |||||||||| | |  ||||||| |     
T  1945944 aacttttgatgtcattctacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaaagtcattcttatgacttcacc 1945845  T
Q  127 gtagaattttccatattt 144  Q
    |||||||||||| |||||    
T  1945844 gtagaattttccttattt 1945827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 6089033 - 6088910
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| || | |||||| ||||||| ||||||||||||| |||| |||||||| ||||||||||| || |||| ||| |    
T  6089033 atactatggtgactgaacttttgatgccactttacaaacagtggggcgttactcacaacacttttgatactatagtgttaacttcaccagaaaaatcatt 6088934  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
     || ||||||| |  |||||||||    
T  6088933 ctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 33893071 - 33893146
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||| |||| ||  |||| |||||||||||    
T  33893071 gactgaacttttaatatcattgtacaaatagtggggtgttactcacaacacttttgatgttatagtgttaacttca 33893146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 15491725 - 15491655
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||| ||  || |||||||||||||    
T  15491725 aacttttgatgccactgtacaaatagtggggtgttactcacaacacttttgatgttacaatgttaacttca 15491655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 29182281 - 29182178
Alignment:
Q  20 ggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtga 119  Q
    ||||||| ||||||||||| || |||| ||| ||||||||||||||||||||| |||| ||  |||| ||||||||||| ||| ||| ||| | || |||    
T  29182281 ggagactgaacttttgatgacactgtataaacagtggggtgttactcacaacacttttgatgttatagtgttaacttcatcaataaaatcattctcatga 29182182  T
Q  120 cttc 123  Q
    ||||    
T  29182181 cttc 29182178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 7055289 - 7055367
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||||||||||||||| ||||||||||| ||||||||| |  | |||||||||  |||| ||||||||||| |||||||    
T  7055289 aacttttgatgtcattctacaaatagtgaggtgttactaattatattttttatgttatagtgttaacttcaccaaaaaa 7055367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 6091257 - 6091368
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||  ||  |||||||||| | ||||||| | | |||| ||||||| ||     
T  6091257 aacttttgatggcattgtacaaacaatggtgtgttactcactacattttttatgtta-catgttaactttaccaaaaaaattattttcatgacttcacaa 6091355  T
Q  128 tagaattttccat 140  Q
    |||||||| ||||    
T  6091356 tagaatttcccat 6091368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 30353417 - 30353540
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| |||| | |||| || |||||||| |||| | | |||||| ||||| |||| ||  |||||||||||||||| || |||||||| |    
T  30353417 atactatggagactgaactatcgatgccactgtacaaacagtgagatattactcgcaacacttttgatgttataatgttaacttcaccagaaaagtcatt 30353516  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
     || ||||||| |  |||||||||    
T  30353517 ctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 7235101 - 7235227
Alignment:
Q  21 gagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgac 120  Q
    |||||| ||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||| ||  |||| |||| |||||| |  |||||||| | || | ||    
T  7235101 gagactgaacttttgatggcaccgtacaaacagtggggtgctactcactacacttttgatgttatagtgttgacttcaccggaaaagtcattctcataac 7235200  T
Q  121 ttcccagtagaattttccatatttaaa 147  Q
    ||| |  |||||||||||||| |||||    
T  7235201 ttcaccatagaattttccataattaaa 7235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 18498549 - 18498448
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtgggg-tgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgact 121  Q
    |||| ||||||||||| || ||||||||  |||||| |||| ||||| ||| |||| || ||||||||||||||||| ||  ||||||| | || |||||    
T  18498549 gactgaacttttgatgccactgtacaaactgtgggggtgttgctcactacacttttgatgctataatgttaacttcaccaggaaagtcattctcatgact 18498450  T
Q  122 tc 123  Q
    ||    
T  18498449 tc 18498448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 4583019 - 4582893
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| || |||||||| |    
T  4583019 atactatggggactgaacttttgatgtcattgtacaaatagtggggtgttactcacaacatttttgatactatagtattaacttcaccagaaaagtcatt 4582920  T
Q  113 ttcgtgacttcccagtagaattttcca 139  Q
    ||||||||||| |  ||||||||||||    
T  4582919 ttcgtgacttcaccatagaattttcca 4582893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 43686130 - 43686016
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |||| ||||||||||| | ||||||||| |||||||||||    
T  43686130 gactgaacttttgatgccattgtacaaacagtggg-tgttactcacaacatttttgatattatagtgttaacttcacccaaaaagtcattttcgtgactt 43686032  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  43686031 caccatagaattttcc 43686016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 37109962 - 37109846
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  |||||||||||||||  |||||||||||  |||| ||||||||||| ||||||||||| |||  ||||||    
T  37109962 gactgaacttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaagtcatttttatgactt 37109863  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  37109862 caccatagaattttcca 37109846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 7334879 - 7334769
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||| ||||||  |||| ||||||||||| ||||||||||| | ||  |||||| | |    
T  7334879 aacttttgatgtcattgtacaaacagtggggtgttactcattacatattttatgttatagtgttaacttcatcaaaaaagtcattctcacgacttcaccg 7334780  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  7334779 tagaattttcc 7334769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 32432552 - 32432432
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||      ||| ||||||||||| || |||| ||| |    
T  32432552 atactatggagactgaacttttgatgtcattgtacaaacaatggggtgttactcacaacattttt-----gatagtgttaacttcaccagaaaaatcatt 32432458  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||||||||||| |  |||||||||||    
T  32432457 ttcgtgacttcaccatagaattttcc 32432432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 32821114 - 32821239
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    ||||||||  |||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||  |||| ||||||||||| ||||||| ||| |    
T  32821114 atactacgaggactgaacttttgatgccattgtacaaacagtggtgtgttactcactacatttttgatgttatattgttaacttcaccaaaaaaatcatt 32821213  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||| ||||||| |  |||||||||||    
T  32821214 ttcatgacttcaccatagaattttcc 32821239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 17842664 - 17842772
Alignment:
Q  30 cttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagta 129  Q
    |||||||||||||||||||||  |||||||||||||||  |||||||||||  |||| ||||||||||| ||||||||||| |||  ||||||| |  ||    
T  17842664 cttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaagtcatttttatgacttcaccata 17842763  T
Q  130 gaattttcc 138  Q
    |||||||||    
T  17842764 gaattttcc 17842772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 43925202 - 43925081
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca-acaaaaaagtcaa 111  Q
    |||||| | ||||| |||||||||||||||||||||    ||| |||||||||||||||||||||||||||| |||||||||||||   |||||| |||     
T  43925202 atactatgtagactgaacttttgatgtcattgtaca----gtgaggtgttactcacaacattttttatactacaatgttaacttcactaaaaaaaatcat 43925107  T
Q  112 tttcgtgacttcccagtagaattttc 137  Q
    |||||||||||  | |||||||||||    
T  43925106 tttcgtgactttaccgtagaattttc 43925081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 29173630 - 29173543
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||| || ||||||||    
T  29173630 gactgaacttttgatgtcattgtacaaacagtggagtgttactcacaacacttttgatactacagtgttaacttcaccagaaaagtca 29173543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 38258630 - 38258521
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||||||||||||  ||| |||||||||||  |||||||||||  |||| ||||||||||| ||||||| ||| |||  ||||||| | |    
T  38258630 aacttttgatgtcattgtacaaacggtgtggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaaatcatttttatgacttcaccg 38258531  T
Q  128 tagaattttc 137  Q
    ||||||||||    
T  38258530 tagaattttc 38258521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 12165842 - 12165726
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||| ||||||||||||||||||||| |||  || ||||| ||||||||||| || |||||||| |||   |||||    
T  12165842 gacttaacttttgatgccactgtacaaacagtggggtgttactcacaacactttggatgctatagtgttaacttcaccagaaaagtcattttaacgactt 12165743  T
Q  123 cccagtagaattttcca 139  Q
    | | |||||||||||||    
T  12165742 caccgtagaattttcca 12165726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 5657542 - 5657669
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| | ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||| ||  |||| |||||||||||  | |||||||| |    
T  5657542 atactatgaagactgaacttttgatgccactgtacaaacagtggggtgttactcacaacacttttgatgttatagtgttaacttcactagaaaagtcatt 5657641  T
Q  113 ttcgtgacttcccagtagaattttccat 140  Q
     || ||||||| |  |||||||||||||    
T  5657642 ctcatgacttcaccatagaattttccat 5657669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 18797412 - 18797304
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    || ||||||||||| ||||||||||| | || ||||||| |      
T  18797412 aacttttgatgtcattgtacaaacagtggggtgttactcattacattttttat--gttagtgttaacttcaccaaaaaagtcattctcatgacttcacca 18797315  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  18797314 tagaattttcc 18797304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 23111275 - 23111180
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||  |||| ||||||||||| || |||| ||| |||| |||||||    
T  23111275 aacttttgatgccattgtacaaatagtggtgtgttactcacaatatttttgatgttatagtgttaacttcaccagaaaaatcattttcatgacttc 23111180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 26980413 - 26980326
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| ||||||||||| || ||||||||  |||||||||||||||||||| |||| || ||||||||||||||||| || ||||||||    
T  26980413 gactgaacttttgatgccactgtacaaaccgtggggtgttactcacaacacttttgatgctataatgttaacttcaccataaaagtca 26980326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 27421450 - 27421533
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||  |||| ||||||||||| |||||||    
T  27421450 gactgaacttttgatgtcattgtacaaacagtggagtgttactcacaacacttttgatgttatagtgttaacttcaccaaaaaa 27421533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 30055617 - 30055534
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  ||| |||| ||| |||| ||||||||||| |||||||    
T  30055617 gactgaacttttgatgtcattgtacaaacagtggggtgttactcattacaattttgatattatagtgttaacttcatcaaaaaa 30055534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 6546619 - 6546534
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||| ||| | |||||||||||||| | |||||||||||||||||||||||| ||||| |||| || ||||| |||||||||||    
T  6546619 atactatggatagtaaacttttgatgttactgtacaaatagtggggtgttactcgcaacacttttgatgctatagtgttaacttca 6546534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 21991736 - 21991611
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| || |||||||| ||||||||||||||| ||||| |||| || ||||| ||||||||||| || |||| ||| |    
T  21991736 atactatggggactgaacttttgatgacactgtacaaacagtggggtgttactcgcaacaattttgatgctatagtgttaacttcaccataaaaatcatt 21991637  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
     || ||||||| |  |||||||||||    
T  21991636 ctcatgacttcaccctagaattttcc 21991611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 9355898 - 9355978
Alignment:
Q  24 actaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaa 104  Q
    |||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| ||||| |||||| |||| |||||    
T  9355898 actaaacttttgatgtcactgtacaaacagtggggtattgctcactacattttttatgctatagtgttaaattcaccaaaa 9355978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 27283848 - 27283718
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| |  |||| |||||||||| ||||||||||||  |||||||||||||||  |||||||| ||  |||| ||||||||||| ||||||| |    
T  27283848 gataatactatgaggactgaacttttgatttcattgtacaaacggtggggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaaat 27283749  T
Q  109 caatttcgtgacttcccagtagaattttcca 139  Q
    || |||  | ||||| |  ||||||||||||    
T  27283748 catttttataacttcaccatagaattttcca 27283718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 31520794 - 31520894
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| | ||| ||||||||||| | |||||| ||  |||| | ||||||||| ||||||||||| |||| ||||||    
T  31520794 gactgaacttttgatgtcactgtacaaacaatggagtgttactcactatatttttgatggtatagtattaacttcaccaaaaaagtcattttcatgactt 31520893  T
Q  123 c 123  Q
    |    
T  31520894 c 31520894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 8861385 - 8861258
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| || |||||||| |||||||||||| ||| |||| |||| || ||||| ||||||||||   | |||||||| |    
T  8861385 atactatggggacttaacttttgatgccactgtacaaacagtggggtgttattcataacacttttgatgctatagtgttaacttcgcgagaaaagtcatt 8861286  T
Q  113 ttcgtgacttcccagtagaattttccat 140  Q
     || ||||||| |  |||||||||||||    
T  8861285 ctcatgacttcaccatagaattttccat 8861258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 12390687 - 12390825
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| || |||  |||||||||||||| || ||||| |||||| |||||||||  ||| |||| ||  |||| ||||||||||| |||||||||    
T  12390687 gataatactatggggacataacttttgatgtcactgcacaaacagtgggatgttactcattacacttttgatgttatagtgttaacttcaccaaaaaagt 12390786  T
Q  109 caatttcgtgacttcccagtagaattttccatatttaaa 147  Q
    | || |  ||||||| |  ||||||||||| | ||||||    
T  12390787 cgatctgatgacttcaccatagaattttccttttttaaa 12390825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 22687339 - 22687229
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||  || || ||||| ||||| |||||||||||||||||||| ||  |||| ||||||||||| || |||||||| |    
T  22687339 atactatggggactgaacttttgataccactgcacaaacagtggagtgttactcacaacatttttgatgttatagtgttaacttcatcagaaaagtcatt 22687240  T
Q  113 ttcgtgacttc 123  Q
     || |||||||    
T  22687239 ctcatgacttc 22687229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 38053571 - 38053493
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||||||||||||||| ||| |||| |||||||  |||||||||||  |||| | ||||||||| |||||||    
T  38053571 aacttttgatgtcattgtacaaacagtagggttttactcattacattttttatgttatagtattaacttcaccaaaaaa 38053493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 34362228 - 34362292
Alignment:
Q  32 tttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaactt 96  Q
    ||||||| || |||||||| ||||||||||||||||||||| |||| || ||||| |||||||||    
T  34362228 tttgatgccactgtacaaacagtggggtgttactcacaacacttttgatgctatagtgttaactt 34362292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 37347112 - 37347012
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| | ||||||||||||||  | |||||| ||  |||| | ||||||||| ||||||| ||| |||| ||||||    
T  37347112 gactgaacttttgatgtcactgtacaaacaatggggtgttactcattatatttttgatggtatagtattaacttcaccaaaaaaatcattttcatgactt 37347013  T
Q  123 c 123  Q
    |    
T  37347012 c 37347012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 10359284 - 10359402
Alignment:
Q  22 agactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgact 121  Q
    ||||| |||||||||||||| |||| ||||||| || |||||||||| ||| |||| || ||||||  |||| || | || |||||||| | || |||||    
T  10359284 agactgaacttttgatgtcactgtataaatagtaggatgttactcactacacttttgatgctataagattaattttaccagaaaagtcattatcatgact 10359383  T
Q  122 tcccagtagaattttccat 140  Q
    || |  |||||||||||||    
T  10359384 tcaccatagaattttccat 10359402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 24211826 - 24211744
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||| |||| || ||| ||| ||||||||||||  |||||||| ||  |||| ||||||||||| |||||||||||    
T  24211826 aacttttgatgccattctataaacagtagggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaagtca 24211744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 31579125 - 31579223
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaat-----agtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||||| | ||||| ||||||||||||||||||| ||||     ||||||||||||||||  |||||||| ||  |||| ||||||||||| |||||||    
T  31579125 atactatgaagactgaacttttgatgtcattgtataaattaaacagtggggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaa 31579223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 44413440 - 44413550
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca-acaaaaaagtcaa 111  Q
    |||||| ||||||  |||||||||| ||| |||||||| | ||||||||||||||| | |||||| ||  |||| |||||||||||   ||||||||||     
T  44413440 atactatggagaccgaacttttgatttcagtgtacaaacattggggtgttactcactatatttttgatgttatagtgttaacttcattaaaaaaagtcat 44413539  T
Q  112 tttcgtgactt 122  Q
    |||| ||||||    
T  44413540 tttcatgactt 44413550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 48928621 - 48928734
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| || |||| ||||||||||| ||  ||||||||||||||||| ||||||| ||| |||| ||  |||| |||| |||||| || ||||||    
T  48928621 gataatactatgg-gactgaacttttgatggcaccgtacaaatagtggggtgctactcactacacttttgatgttatagtgttgacttcaccagaaaagt 48928719  T
Q  109 caatttcgtgacttc 123  Q
    || | || |||||||    
T  48928720 cattctcatgacttc 48928734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 10481696 - 10481619
Alignment:
Q  22 agactaaacttttgatgtcattgtacaaatagt-ggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||| || |||||||||||||||||||| ||| |||||||||||||  | |||||||||  |||| |||||||||||    
T  10481696 agactgaatttttgatgtcattgtacaaacagtgggggtgttactcattatattttttatgttatagtgttaacttca 10481619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 48928354 - 48928454
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| || |||| ||||||||||| ||  ||||||||||||||||| ||||||| ||| |||| ||  |||| |||| |||||| || ||||||    
T  48928354 gataatactatgg-gactgaacttttgatggcaccgtacaaatagtggggtgctactcactacacttttgatgttatagtgttgacttcaccagaaaagt 48928452  T
Q  109 ca 110  Q
    ||    
T  48928453 ca 48928454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 8299256 - 8299192
Alignment:
Q  72 attttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaatttt 136  Q
    |||||| |||||||| ||||||||||| || |||||||| |||||||||||| |  |||||||||    
T  8299256 atttttgatactatagtgttaacttcaccagaaaagtcattttcgtgacttcaccatagaatttt 8299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 26524404 - 26524513
Alignment:
Q  29 acttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagt 128  Q
    |||||||||| || || ||||| | ||| |||||| ||||||||||||| ||  |||| ||||||| ||| || |||||||| | || ||||||| |  |    
T  26524404 acttttgatgccactgcacaaacaatggagtgttagtcacaacatttttgatgttatagtgttaacatcaccagaaaagtcattctcatgacttcaccat 26524503  T
Q  129 agaattttcc 138  Q
    ||||||||||    
T  26524504 agaattttcc 26524513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 37704238 - 37704182
Alignment:
Q  43 tgtacaaatagtggggtgttactcacaaca-ttttttatactataatgttaacttca 98  Q
    |||||||| | ||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  37704238 tgtacaaacaatggggtgttactcactacatttttttatgctatagtgttaacttca 37704182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 4167047 - 4166916
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||| |    
T  4167047 atactatggggactgaacttttgatgccattgtacaaacagtggggtgttactcacaatatttttgatactataatgttaacttcaccagaaaagtcatt 4166948  T
Q  113 ttcgtgacttcccagtagaattttccatattt 144  Q
    ||||||||||| |  ||||||||||| |||||    
T  4166947 ttcgtgacttcaccatagaattttccttattt 4166916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 33551079 - 33551192
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||  |||||||||| | || ||||||| | |    
T  33551079 aacttttgatgtcattgtacaaacagtggggtgttactcactacatttttgatgttatagtgttaacttcactaaaaaagtcattctcatgacttcaccg 33551178  T
Q  128 tagaattttccata 141  Q
    ||||||||||||||    
T  33551179 tagaattttccata 33551192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 13711579 - 13711492
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||| |||| || ||||||||||||||||| || ||||||||    
T  13711579 gactaaacttttgatgtcactgtacaaactgtggggtgttactcacaacacttttgatgctataatgttaacttcaccagaaaagtca 13711492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 4264151 - 4264280
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| ||||||| |||||||||||||| |||||||| |||||| |||||||||||||| |||| || ||||| ||||||||| | || ||||||    
T  4264151 gataatactatggagactgaacttttgatgtcactgtacaaacagtgggatgttactcacaacacttttgatgctatagtgttaactttaccagaaaagt 4264250  T
Q  109 caatttcgtgacttcccagtagaattttcc 138  Q
    || | |  ||||||| |  |||||||||||    
T  4264251 cattatgatgacttcaccatagaattttcc 4264280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 39167451 - 39167551
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||| | |||| |||||||  ||||||||||| ||||||| ||| | |||||||||    
T  39167451 gactgaacttttgatgtcattgtacaaacagtgaggtgttactcacaatacttttgatactattctgttaacttcatcaaaaaaatcattctcgtgactt 39167550  T
Q  123 c 123  Q
    |    
T  39167551 c 39167551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 27350026 - 27350109
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| |||||||||||||| |||||||| |||| ||||||||||||||||||||| || ||||| ||||||||||| |||||||    
T  27350026 gactgaacttttgatgtcactgtacaaacagtgtggtgttactcacaacatttttgatgctatagtgttaacttcaccaaaaaa 27350109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 3177054 - 3176941
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||| ||||||||| ||| |||| | ||||||||| || |||||||| |||||| ||||    
T  3177054 gactgaacttttgatgtcattgtacaaacagttgcgtgttactcaaaacatttttgatattatagtattaacttcatcagaaaagtcattttcgtaactt 3176955  T
Q  123 cccagtagaatttt 136  Q
    | |  |||||||||    
T  3176954 caccatagaatttt 3176941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 19313967 - 19313850
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||| |||||||  |||||||||||||||| |||| || ||||||||||||||||| || |||||||| | |  ||||||    
T  19313967 gactgaacttttgatgtcactgtataaatagtaaggtgttactcacaacacttttgatgctataatgttaacttcaccagaaaagtcattctaatgactt 19313868  T
Q  123 cccagtagaattttccat 140  Q
    | |  |||||||||||||    
T  19313867 caccatagaattttccat 19313850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 44913772 - 44913661
Alignment:
Q  28 aacttttgatgtcattgtacaaata-gtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttccca 126  Q
    ||||||| |||||||| |||||| | ||| ||||||||||||||||||||| |||||| | |||||||||| ||| |||||||| |||||||||||| |     
T  44913772 aactttttatgtcattttacaaacaagtgaggtgttactcacaacatttttgatactacagtgttaacttc-acataaaagtcattttcgtgacttcacc 44913674  T
Q  127 gtagaattttcca 139  Q
     ||||||||||||    
T  44913673 atagaattttcca 44913661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 26357687 - 26357592
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    |||||||||||||| |||||||| |||||| |||||||||| ||| |||| ||  |||| ||||||||||| || |||||||| |||| |||||||    
T  26357687 aacttttgatgtcactgtacaaacagtgggatgttactcactacagttttgatgttatagtgttaacttcatcagaaaagtcattttcatgacttc 26357592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 37905823 - 37905740
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| |||||||||||||||||||||||  ||||||||||||||   |||||||||||  |||| ||||||||||| |||||||    
T  37905823 gactgaacttttgatgtcattgtacaaacggtggggtgttactcgttacattttttatgttatagtgttaacttcaccaaaaaa 37905740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 19289416 - 19289498
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||||||||||||||| | ||||||||||||||  | |||||| ||  |||| ||||||||||| |||||||||||    
T  19289416 aacttttgatgtcattgtacaaacaatggggtgttactcattatatttttgatgttatagtgttaacttcatcaaaaaagtca 19289498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 35959019 - 35958905
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||| ||||||||||||||| ||||||||||| ||||  |||||||||||  |||| ||  ||||||| ||||||||||| |||  |||||||        
T  35959019 aacttttaatgtcattgtacaaacagtggggtgttgctcattacattttttatgttatagtggcaacttcaccaaaaaagtcatttttatgacttcatca 35958920  T
Q  128 tagaattttccatat 142  Q
    |||||||||||||||    
T  35958919 tagaattttccatat 35958905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 5881664 - 5881600
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    |||||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  5881664 atactaaggggactcaacttttgatgtcactgtacaaacagtggggtgttactcacaacactttt 5881600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 43770927 - 43771010
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||| || |||| ||| ||||||||||||||||||||| |||| ||  |||| ||||||||||| |||||||    
T  43770927 gactgaacttttgatgccactgtataaacagtggggtgttactcacaacacttttgatgttatagtgttaacttcaccaaaaaa 43771010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 4478484 - 4478402
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaa 105  Q
    |||||||||||||||| || |||||||| | ||| ||||||||||||||| |||| ||  |||| ||||||||||| ||||||    
T  4478484 gactaaacttttgatgccactgtacaaacaatggagtgttactcacaacacttttgatgttatagtgttaacttcaccaaaaa 4478402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 11366474 - 11366556
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||||||||||||| ||||||||||| | |||||||||  |||||||| ||  |||| |||||| |||| |||||||||||    
T  11366474 aacttttgatgtcattatacaaatagtgagatgttactcattacatttttgatgttatagtgttaatttcaccaaaaaagtca 11366556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 17071830 - 17071940
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||||| || | ||||||| || ||||||||  |  |||| ||||||||||| ||||||||||| |  | ||||||| |      
T  17071830 aacttttgatgtcattgtacaaataatgagatgttacttactacatttttgttgttatagtgttaacttcaccaaaaaagtcattcgcatgacttcacca 17071929  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  17071930 tagaattttcc 17071940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 18494386 - 18494456
Alignment:
Q  53 gtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    |||||||||||||||||||| |||| || ||||| ||||||||||| || |||||||| |||| |||||||    
T  18494386 gtggggtgttactcacaacacttttgatgctatagtgttaacttcaccagaaaagtcattttcatgacttc 18494456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 43648333 - 43648415
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaa 105  Q
    |||| |||||||||||||||| |||||| |||| |||||||||||  |||||||| ||  |||| ||||||||||| ||||||    
T  43648333 gactgaacttttgatgtcattatacaaacagtgaggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaa 43648415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 29242216 - 29242341
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| | ||||| ||||||||||  || |||||||| ||||||||||||| ||| | |||||||||  |||| | ||||||||| |||||||  || |    
T  29242216 atactatgaagactgaacttttgataccactgtacaaacagtggggtgttacgcactatattttttatgttatagttttaacttcaccaaaaaaaccatt 29242315  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||| ||||||| |  |||||||||||    
T  29242316 ttcatgacttcaccatagaattttcc 29242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 33902181 - 33902124
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttat 80  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| |||||||||||    
T  33902181 gactgaacttttgatgtcattttacaaacagtggggtattactcactacattttttat 33902124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 36642101 - 36641988
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| |||| |||||||||| ||||| |||| || ||||| | |||| |||| || |||||||| | || ||||||    
T  36642101 gactgaacttttgatgtcactgtacaaacagtgaggtgttactcgcaacacttttgatgctatagtattaatttcaccagaaaagtcattctcatgactt 36642002  T
Q  123 cccagtagaatttt 136  Q
    | |  |||||||||    
T  36642001 caccatagaatttt 36641988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 41463943 - 41464025
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||| || |||||||| |||| |||||||||||||||| |||| ||  |||| | ||||||||| |||||| ||||    
T  41463943 aacttttgatgccactgtacaaacagtgaggtgttactcacaacacttttgattttatagtattaacttcaccaaaaatgtca 41464025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 4763741 - 4763692
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||| ||||    
T  4763741 aacttttgatgtcactgtacaaacagtggggtgttactcactacagtttt 4763692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 17054190 - 17054299
Alignment:
Q  29 acttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagt 128  Q
    |||||||||||||||||||||| | || | ||||||| || |||||||| ||  |||| | ||||||||| ||||||||||| |  | ||||||| |  |    
T  17054190 acttttgatgtcattgtacaaacaatgagatgttacttactacatttttgatgttatagtattaacttcaccaaaaaagtcattcgcatgacttcaccat 17054289  T
Q  129 agaattttcc 138  Q
    ||||||||||    
T  17054290 agaattttcc 17054299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 31570822 - 31570907
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||| |||||||||||||| | || |||||||||||||||||| |||||| |||| ||  |||| |||||| |||| || ||||||    
T  31570822 gactgaacttttgatgtcactataaaaatagtggggtgttacttacaacacttttaatgttatagtgttaatttcaccagaaaagt 31570907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 33660456 - 33660529
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaactt 96  Q
    |||| ||||||||||| || |||||||| ||| ||||||||||||||||| |||| ||  |||| |||||||||    
T  33660456 gactgaacttttgatgccactgtacaaacagttgggtgttactcacaacacttttgatgttatagtgttaactt 33660529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 33709310 - 33709395
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||| || |||| |||||||||||||| ||||| || ||||| ||||||||| ||||| |||| ||  |||| |||||||||||    
T  33709310 atactatggggactgaacttttgatgtcactgtactaacagtggagtgttactcgcaacacttttgatgttatagtgttaacttca 33709395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 19424716 - 19424800
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaag 107  Q
    |||||||||||||||| || | || ||| | ||||||||||||||||||| |||| ||  |||| ||||||||||| || |||||    
T  19424716 gactaaacttttgatgccactatataaacaatggggtgttactcacaacacttttgatgttatagtgttaacttcaccagaaaag 19424800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 9864262 - 9864162
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |||||||||||    
T  9864262 gactgaacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatactatagtgttaatttcaccaaaaaagtcattttcgtgactt 9864163  T
Q  123 c 123  Q
    |    
T  9864162 c 9864162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 12876223 - 12876102
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||| || |||||||| |||||||||||    
T  12876223 gactgaacttttgatgtcattgtacaaacagttgggtgttactcacaacattttttatattatagtgttaacttcatcagaaaagtcattttcgtgactt 12876124  T
Q  123 cccagtagaattttccatattt 144  Q
      |  |||||||||||| ||||    
T  12876123 aaccatagaattttccaaattt 12876102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 36695032 - 36695157
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||| || |||||||| |    
T  36695032 atactatggggactgaacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattatagtgttaacttcatcagaaaagtcatt 36695131  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||| ||||||| |  |||||||||||    
T  36695132 ttcctgacttcaccatagaattttcc 36695157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 40862536 - 40862418
Alignment:
Q  21 gagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacatttttt-atactataatgttaacttcaacaaaaaagtcaatttcgtga 119  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||| || |||||| | ||||||||    
T  40862536 gagactgaacttttgatgccattgtacaaacagtggggtgttactcacaacattttttgatattatagtgttaacttcaccagaaaagttattttcgtga 40862437  T
Q  120 cttcccagtagaattttcc 138  Q
    |||| |  |||||||||||    
T  40862436 cttcactatagaattttcc 40862418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 10555283 - 10555394
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||  |||| ||||||||||| ||||||||||| | || ||||||| | |    
T  10555283 aacttttgatgtcattgtacaaacagtggagtgttactcattacattttttatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccg 10555382  T
Q  128 tagaattttcca 139  Q
    ||||||||||||    
T  10555383 tagaattttcca 10555394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 6098584 - 6098711
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| |||||||||||||| |||||||| ||||||||||||||||| | |||||| || ||||| | ||||||||| ||||||||| | |    
T  6098584 atactatggggactgaacttttgatgtcactgtacaaacagtggggtgttactcactatatttttgatgctatagtattaacttcaccaaaaaagttatt 6098683  T
Q  113 ttcgtgacttcccagtagaattttccat 140  Q
    ||| ||||||| |  |||||||||||||    
T  6098684 ttcatgacttcaccatagaattttccat 6098711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 13307751 - 13307621
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||||||||| || |||| |||||||||||||| ||||||||||||| |||||||||||||||| |||| ||  |||| ||||||||||| || |||| |    
T  13307751 gataatactatggggactgaacttttgatgtcactgtacaaatagtgaggtgttactcacaacacttttgatgttatagtgttaacttcaccagaaaaat 13307652  T
Q  109 caatttcgtgacttcccagtagaattttcca 139  Q
    || | || ||||||| |  ||||||||||||    
T  13307651 cattctcatgacttcaccatagaattttcca 13307621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 23854507 - 23854625
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||| ||||| ||| ||||||||||||  |||||||||||  |||| ||||||||||| ||||||||||| | || ||||||    
T  23854507 gactgaacttttgatgtcattgcacaaacagttgggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaagtcattctcatgactt 23854606  T
Q  123 cccagtagaattttccata 141  Q
    | | ||||| |||||||||    
T  23854607 caccgtagacttttccata 23854625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 1205041 - 1204926
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||| |||||||||||  |||| ||||||||||| || |||||||| | || ||||||    
T  1205041 gactgaacttttgatgtcattgtacaaacagtgatgtgttactcactacattttttatgttatagtgttaacttcaccagaaaagtcattctcatgactt 1204942  T
Q  123 cccagtagaattttcc 138  Q
    | | ||| ||||||||    
T  1204941 caccgtaaaattttcc 1204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 16446951 - 16447066
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||| ||| |||| ||  |||| ||||||||| | || |||||||| |||| ||||||    
T  16446951 gactaaacttttgatgccattatacaaacagtggggtgttactcactacaattttgatgttatagtgttaactttatcagaaaagtcattttcatgactt 16447050  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  16447051 caccatagaattttcc 16447066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 37970600 - 37970695
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    ||||||||||| ||||||||||| ||||||||||||||||  |||||||| ||  |||| ||||||||||| ||||||||||| | || |||||||    
T  37970600 aacttttgatggcattgtacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattctcatgacttc 37970695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 8803891 - 8803973
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||||||||||||| |||||||||||| ||||||||||  |||||||| ||  |||| ||||||||||| |||||||||||    
T  8803891 aacttttgatgtcattctacaaatagtggagtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaagtca 8803973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 41362624 - 41362517
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||| || |||   ||||||||||| ||||||||||| |||| | ||||| |      
T  41362624 aacttttgatgtcactatacaaatagtggggtgttactcactacattttt-atgctag--tgttaacttcaccaaaaaagtcattttcataacttcacca 41362528  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  41362527 tagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 30654664 - 30654742
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||||||||  ||||| ||||||||||||||||  |||||||||||  |||| ||||||||||| |||||||    
T  30654664 aacttttgatgtcattcaacaaacagtggggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaa 30654742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 38644102 - 38643977
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| ||||||||||| || |  ||||| ||||||||||||||||||||| |||| ||  |||| ||||||||| | ||||||||||| |    
T  38644102 atactatggagactgaacttttgatgccactagacaaacagtggggtgttactcacaacacttttgatgttatagtgttaacttgaccaaaaaagtcatt 38644003  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
     || ||| ||| |  |||||||||||    
T  38644002 ctcatgatttcaccatagaattttcc 38643977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 1150181 - 1150296
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||| ||||||||| |||||| |||||||||  |||||||| ||  ||||  |||||||||| ||||||||||| | |  ||||||    
T  1150181 gactgaacttttgatgtcgttgtacaaacagtgggatgttactcattacatttttgatgttatagcgttaacttcaccaaaaaagtcattcttatgactt 1150280  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  1150281 caccatagaattttcc 1150296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 11727138 - 11727055
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||| || | ||||||||||||||||||||| |||||| |||| ||  |||| ||||||||||| |||||||    
T  11727138 gactgaacttttgatgccactatacaaatagtggggtgttacttacaacacttttgatgttatagtgttaacttcaccaaaaaa 11727055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 31933962 - 31934045
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||  | |||||| |||  ||| ||||||||||| |||||||    
T  31933962 gactgaacttttgatgtcattgtataaagagtggggtgttactcattatatttttgatatcatagtgttaacttcaccaaaaaa 31934045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 34952107 - 34952222
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| |||||| |||||||||||||| |||| ||  |||| ||||||||| | || |||||||| |||  ||||||    
T  34952107 gactgaacttttgatgtcactgtacaaacagtgggctgttactcacaacacttttgatgatatagtgttaacttgaccagaaaagtcattttaatgactt 34952206  T
Q  123 cccagtagaattttcc 138  Q
      |  |||||||||||    
T  34952207 tactatagaattttcc 34952222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 465966 - 465856
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| || |||||||| || |||||||| ||||||||||||||||||||| |||| ||  |||  ||||||||||| || |||||||| |    
T  465966 atactaaggggactgaatttttgatgccactgtacaaacagtggggtgttactcacaacacttttgatgttatcgtgttaacttcaccacaaaagtcatt 465867  T
Q  113 ttcgtgacttc 123  Q
    ||  |||||||    
T  465866 ttaatgacttc 465856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 43643676 - 43643786
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||| |||||||||||||||| ||| | ||||||||||  |||||||| ||  |||| ||||||||||| ||||| ||||| | || ||||||| |      
T  43643676 aactttggatgtcattgtacaaacagtagagtgttactcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcacca 43643775  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  43643776 tagaattttcc 43643786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 5300022 - 5300138
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||| ||| | ||| |||| |||||| |||| || ||||| |||||||||||  |||||||||| | || ||||||    
T  5300022 gactgaacttttgatgccactgtacaaacagtagagtgctacttacaacacttttgatgctatagtgttaacttcattaaaaaagtcattctcatgactt 5300121  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  5300122 caccatagaattttcca 5300138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 16222977 - 16222862
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  ||||||   ||||||| | |||||||||  |||| |||||| |||| || |||||||| | || ||| ||    
T  16222977 gactgaacttttgatgtcattgtacaaactgtggggaactactcactatattttttatgttatagtgttaaattcaccagaaaagtcattctcatgattt 16222878  T
Q  123 cccagtagaattttcc 138  Q
    | | ||||||||||||    
T  16222877 caccgtagaattttcc 16222862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 27082914 - 27083029
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||| ||| || || ||||| ||||||||||||||||| ||| |||| || ||||| ||||||||||| || |||||||| | |  ||||||    
T  27082914 gactgaacttttaatgccactgcacaaacagtggggtgttactcactacacttttgatgctatagtgttaacttcaccagaaaagtcagtctgatgactt 27083013  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  27083014 caccatagaattttcc 27083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 34895081 - 34894966
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || | |||||| ||||| ||||||||||| ||| | || ||  |||| ||||||||||| || |||||||| |||| ||||||    
T  34895081 gactgaacttttgatgccactttacaaacagtggagtgttactcactacagtgttgatgttatagtgttaacttcatcagaaaagtcattttcatgactt 34894982  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  34894981 caccatagaattttcc 34894966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 1149713 - 1149762
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    ||||||||||||||||||||||| |||||| |||||||||  ||||||||    
T  1149713 aacttttgatgtcattgtacaaacagtgggttgttactcattacattttt 1149762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 43025799 - 43025741
Alignment:
Q  40 cattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||||||||| |||||||| ||| |||||||| |||| ||||||||  ||||||||||    
T  43025799 cattgtacaaagagtggggtattaatcacaacacttttgatactatatcgttaacttca 43025741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 34133041 - 34132941
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |||||||||||    
T  34133041 gactgaacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatactatagtgttaatttcaccaaaaaagtcattttcgtgactt 34132942  T
Q  123 c 123  Q
    |    
T  34132941 c 34132941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 4015566 - 4015445
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| | |||||| ||| ||||||||||||||||| |||| || ||||| ||||||||||| || |||||||| | || ||||||    
T  4015566 gactgaacttttgatgtcactctacaaacagttgggtgttactcacaacacttttgatgctatagtgttaacttcatcagaaaagtcattctcatgactt 4015467  T
Q  123 cccagtagaattttccatattt 144  Q
    | |  |||||||||||||||||    
T  4015466 caccatagaattttccatattt 4015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 35844442 - 35844317
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||  |  |||| ||||||||||| || |||||||| |    
T  35844442 atactatggggactaaacttttgatgtcactgtacaaacagtgaggtgttactcacaacatttttgttgttatagtgttaacttcaccagaaaagtcatt 35844343  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
     || ||||||| |  |||||||||||    
T  35844342 atcatgacttcaccatagaattttcc 35844317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 24489032 - 24489132
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||| |||| |||||  ||||||||||||||||||| |||||||| | |||||||||  |||||| ||| |||||||||||    
T  24489032 gactgaacttttgatgtcattgtgcaaacagtggaatgttactcacaacatttttaatactatagtcttaacttcacaaaaaaaatcattttcgtgactt 24489131  T
Q  123 c 123  Q
    |    
T  24489132 c 24489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 29099471 - 29099374
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| |||||| ||||||| |||||||| ||||||||||||||||| |||||||||||  |||| ||||||||||| || ||||||||    
T  29099471 atactaaggggactgaactttagatgtcactgtacaaacagtggggtgttactcacgacattttttatgttatagtgttaacttcaccagaaaagtca 29099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 3655272 - 3655372
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  |||||||||||||||  |||||||||||  |||| ||||||||| | ||||||||||| |||  ||||||    
T  3655272 gactgaacttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaactttatcaaaaaagtcatttttatgactt 3655371  T
Q  123 c 123  Q
    |    
T  3655372 c 3655372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 51213051 - 51213167
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| ||||||||||| ||||||||||| ||||  |||||||||||  || | ||||||||||| ||||||||||| | || ||||||    
T  51213051 gactcaacttttgatgccattgtacaaacagtggggtgttgctcattacattttttatgttacagtgttaacttcaccaaaaaagtcattctcatgactt 51213150  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  51213151 caccatagaattttcca 51213167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 46297822 - 46297945
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    ||||||||| |||| ||||||||| | ||||||||||| ||||| ||||||||||| | |||||| ||  |||| ||||||||||| || |||||||| |    
T  46297822 atactacggggactgaacttttgacgccattgtacaaacagtggtgtgttactcactatatttttgatgttatagtgttaacttcaccagaaaagtcatt 46297921  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||| ||||||| |  |||||||||    
T  46297922 ttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 44186561 - 44186654
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||||| || |||| |||||||||||||| |||| ||| || |||||||||||||||||| |||| || ||||| ||||||||||| |||||||    
T  44186561 atactatggggactgaacttttgatgtcactgtataaacagcggggtgttactcacaacacttttgatgctatagtgttaacttcaccaaaaaa 44186654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 22446140 - 22446247
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaac-aaaaaagtcaatttcgtgacttccca 126  Q
    ||||||||||| || |||||||| ||||||||||||||||| | |||||| ||  |||||||||||||||| | |||||||||| |||| ||||||| |     
T  22446140 aacttttgatgccactgtacaaa-agtggggtgttactcactatatttttgatgatataatgttaacttcaccaaaaaaagtcattttcatgacttcacc 22446238  T
Q  127 gtagaattt 135  Q
    |||||||||    
T  22446239 gtagaattt 22446247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 37203173 - 37203057
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||| ||||||||||||||||| ||| |||| ||  |||| ||||||||||| ||||||| ||| |||  ||||||    
T  37203173 gactgaacttttgatgccactgtacaaacagtggggtgttactcactacaattttgatgttatagtgttaacttcatcaaaaaaatcatttttatgactt 37203074  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  37203073 caccatagaattttcca 37203057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 47481626 - 47481546
Alignment:
Q  25 ctaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaa 105  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  |||||||| ||  |||| ||||||||||| ||||||    
T  47481626 ctaaacttttgatgtcattctacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaa 47481546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 40552329 - 40552444
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||  |||||||| ||  |||| ||||||||||  ||||||||||| | || ||||||    
T  40552329 gactgaacttttgatgtcattgtacaaacggtggagtgttactcattacatttttgatgttatagtgttaacttctccaaaaaagtcattctcatgactt 40552428  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  40552429 caccatagaattttcc 40552444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 54505906 - 54505827
Alignment:
Q  31 ttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||||| || ||||| ||||||||||||||  |||||||| ||  |||| |||||||||||||||||||||||    
T  54505906 ttttgatgtcattctataaataatggggtgttactcattacatttttgatgttatagtgttaacttcaacaaaaaagtca 54505827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 2008034 - 2007956
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||| || |||||||| ||||||||||||||||||||| |||| |  ||||| |||||||||||| ||||||    
T  2008034 aacttttgatgccactgtacaaacagtggggtgttactcacaacacttttaacgctatagtgttaacttcaaaaaaaaa 2007956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 48355042 - 48354932
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| ||||||||||| | ||||||||||||||  |||||||| ||| |||| ||||||||||| || |||| ||| | || ||||||| |      
T  48355042 aacttttgatgccattgtacaaacaatggggtgttactcattacatttttaatattatagtgttaacttcaccataaaaatcattctcatgacttcacca 48354943  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  48354942 tagaattttcc 48354932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 21193712 - 21193591
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| | |||||| ||||||||||||||||||||| |||| || | | | ||||||||||| || |||||||| | || ||||||    
T  21193712 gactgaacttttgatgtcactctacaaacagtggggtgttactcacaacacttttgattcaacagtgttaacttcaccagaaaagtcattctcatgactt 21193613  T
Q  123 cccagtagaattttccatattt 144  Q
      |  ||||||||||| |||||    
T  21193612 taccatagaattttccttattt 21193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 37157813 - 37157698
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||  ||||||||||||||||| ||| |||| ||  |||| ||||||||||| |||||||| || |||| ||||||    
T  37157813 gactgaacttttgatgccactgtacaac-agtggggtgttactcactacaattttgatgttatagtgttaacttcatcaaaaaagccattttcatgactt 37157715  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  37157714 caccatagaattttcca 37157698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 4761719 - 4761802
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||  |||||||| ||| |||| | ||||||||| |||||||    
T  4761719 gactgaacttttgatgtcattgtacaaacagtgaagtgttactcattacatttttgatattatagtattaacttcaccaaaaaa 4761802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 11466940 - 11466881
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaaca 72  Q
    |||||| || |||||||||||||||| || |||||||| |||||||||||||||||||||    
T  11466940 atactatggggactaaacttttgatgccactgtacaaacagtggggtgttactcacaaca 11466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 3362354 - 3362276
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||| || ||||||||||||||| |||||||||| | |||| | || ||||| ||||||||||| |||||||    
T  3362354 aacttttgatgccactgtacaaatagtgggatgttactcactatatttctgatgctatagtgttaacttcaccaaaaaa 3362276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 7327542 - 7327640
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatg-ttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| |||||||||||||| |||||||||| ||| ||||||||||||||| |||| ||  |||| || |||||||||  ||||||||||    
T  7327542 atactatggggactgaacttttgatgtcactgtacaaataatggagtgttactcacaacacttttgatgttatagtgtttaacttcactaaaaaagtca 7327640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 20373371 - 20373449
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||||||||||||||| |||||||||||||||   |||||||| ||  |||| | ||||||||| |||||||    
T  20373371 aacttttgatgtcattgtacaaacagtggggtgttactcgttacatttttgatgttatagtattaacttcaccaaaaaa 20373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 21009877 - 21009926
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  21009877 aacttttgatgtcattctacaaatagtggggtgttactcattacattttt 21009926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 33378841 - 33378930
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||||||| || |||| ||||||||||||||  ||||||||| ||||||  ||||||| ||| |||| |||||||| |||| ||||||    
T  33378841 gataatactatggggactgaacttttgatgtcaccgtacaaatattggggtactactcactacacttttgatactatagtgttgacttca 33378930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 43975961 - 43976034
Alignment:
Q  26 taaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaa 99  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||| ||| |||| || ||||| |||| |||||||    
T  43975961 taaacttttgatgtcatcgtacaaatagtggagtgctactcactacacttttgatgctatagtgttgacttcaa 43976034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 2613971 - 2613896
Alignment:
Q  48 aaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    |||||||| |||||||||||||||| ||||  |  |||| ||||||||||||||||||||||| |||  |||||||    
T  2613971 aaatagtgtggtgttactcacaacacttttggtgttatagtgttaacttcaacaaaaaagtcattttaatgacttc 2613896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 26941330 - 26941445
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||  | | |||| ||  |||| ||||||||||| ||||||| ||| | |  ||||||    
T  26941330 gactgaacttttgatgtcattatacaaacagtggggtgttactcattataattttgattttatagtgttaacttcaccaaaaaaatcattcttatgactt 26941429  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  26941430 caccatagaattttcc 26941445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 44891583 - 44891495
Alignment:
Q  52 agtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaattttccata 141  Q
    |||||| |||||||||||||| |||| ||  |||| |||||||||| || ||||||||| |||| ||||||| | ||| |||||||||||    
T  44891583 agtgggatgttactcacaacacttttgatgttatagtgttaacttc-accaaaaagtcattttcatgacttcaccgtataattttccata 44891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14586730 - 14586794
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    |||||| || ||| ||||||||||| ||| |||| |||||||| |||||||||||||||| ||||    
T  14586730 atactaaggggacaaaacttttgatatcactgtataaatagtgaggtgttactcacaacactttt 14586794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 40936097 - 40935997
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||| ||| | || |||||||||| ||||| |||| || ||||| ||||||||||| || |||| ||| | || ||||||    
T  40936097 gactgaacttttgatgtcactgtataaacaatgaggtgttactcgcaacacttttgatgctatagtgttaacttcaccagaaaaatcattctcatgactt 40935998  T
Q  123 c 123  Q
    |    
T  40935997 c 40935997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 42506145 - 42506189
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactca 67  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||    
T  42506145 gactgaacttttgatgtcattgtacaaacagtggggtattactca 42506189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 55343403 - 55343469
Alignment:
Q  72 attttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaattttcc 138  Q
    |||||| ||| |||| ||||||||||| || |||||||| |||||||||||| |  |||||||||||    
T  55343403 atttttgatattatagtgttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcc 55343469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 11357434 - 11357535
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtgggg-tgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgact 121  Q
    |||| |||||||||||  | |||||||| ||||||| |||||||||| | | |||| || ||||| ||||||||||| || |||||||| | || |||||    
T  11357434 gactgaacttttgatgcaactgtacaaacagtgggggtgttactcactatacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgact 11357533  T
Q  122 tc 123  Q
    ||    
T  11357534 tc 11357535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 33698263 - 33698219
Alignment:
Q  54 tggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||||||||||||||||||||| ||  |||| |||||||||||    
T  33698263 tggggtgttactcacaacatttttgatgttatagtgttaacttca 33698219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 17167838 - 17167715
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||| |    
T  17167838 atactatggagaatgaacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattataatgttaacttcatcagaaaagtcatt 17167739  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||||| ||||| |  |||||||||    
T  17167738 ttcgtaacttcaccatagaatttt 17167715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 17173415 - 17173292
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||| |    
T  17173415 atactatggagattgaacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattataatgttaacttcatcagaaaagtcatt 17173316  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||||| ||||| |  |||||||||    
T  17173315 ttcgtaacttcaccatagaatttt 17173292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 4205221 - 4205116
Alignment:
Q  33 ttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaa 132  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||| ||| |||| ||||||||||| || |||||||| |||| ||||||| |  |||||    
T  4205221 ttgatgtcattgtacaaacagtggggtgttattcagaacatttttgatattatagtgttaacttcatcagaaaagtcattttcctgacttcaccatagaa 4205122  T
Q  133 ttttcc 138  Q
    ||||||    
T  4205121 ttttcc 4205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 27396727 - 27396618
Alignment:
Q  27 aaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttccca 126  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||| |||| || ||||||||||||||||| || |||||||| | || ||||||| |     
T  27396727 aaacttttgatgtcattgtacaaacagtagggtgttactcataacacttttaatgctataatgttaacttcaccagaaaagtcattctcatgacttcacc 27396628  T
Q  127 gtagaatttt 136  Q
     |||||||||    
T  27396627 atagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 37775779 - 37775670
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||| ||| |||| || |||||||| ||||||| ||| |||  ||||||| | |    
T  37775779 aacttttgatgccactgtacaaacagtggggtgttactcacaacatttttaatattatagtgctaacttcaccaaaaaaatcattttaatgacttcaccg 37775680  T
Q  128 tagaattttc 137  Q
    ||||||||||    
T  37775679 tagaattttc 37775670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 49376092 - 49375964
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaaca-aaaaagtcaa 111  Q
    |||||| | ||||| ||||||||||| || |||||||  ||||||||||||||||| ||| |||| || ||||||||||||||||| || |||||||||     
T  49376092 atactatgaagactgaacttttgatgccactgtacaagcagtggggtgttactcacgacacttttgatgctataatgttaacttcaccagaaaaagtcat 49375993  T
Q  112 tttcgtgacttcccagtagaattttccat 140  Q
    | || ||||||| | ||||||||||||||    
T  49375992 tctcatgacttcaccgtagaattttccat 49375964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 9139355 - 9139247
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||| |||||| ||||||||  |||||||||||||||| |  |||||||| |||||| |||||||||| |||||||||||||||| ||||||| |      
T  9139355 aactttttatgtcactgtacaaacggtggggtgttactcacta--ttttttatgctataacgttaacttcaccaaaaaagtcaatttcatgacttcacca 9139258  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  9139257 tagaattttcc 9139247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 35021121 - 35021246
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    ||||||||  ||| |||||||||| | || |||||||| ||||| ||||||||||| |||||||| ||  |||||||||||||||| || |||||||| |    
T  35021121 atactacgaggacgaaacttttgacgccaatgtacaaacagtggtgtgttactcactacatttttgatgttataatgttaacttcaccagaaaagtcatt 35021220  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||| ||||||| |  |||||||||||    
T  35021221 ttcatgacttcaccatagaattttcc 35021246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 34361592 - 34361702
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||| |||||||| |||||| ||||||||||||||||  |||||||||||  |||| ||||||||||| ||||||||||| | |  ||||||| |      
T  34361592 aacttttaatgtcattctacaaacagtggggtgttactcattacattttttatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcacca 34361691  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  34361692 tagaattttcc 34361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 39398034 - 39397916
Alignment:
Q  22 agactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgact 121  Q
    ||||| |||||||||||||| |||||||| | ||||||||||||||||||| |||| ||  |||| ||||||||||| || |||||||| | |  |||||    
T  39398034 agactgaacttttgatgtcactgtacaaacaatggggtgttactcacaacacttttaatgttatagtgttaacttcaccataaaagtcattctaatgact 39397935  T
Q  122 tcccagtagaattttccat 140  Q
    || |  |||||||||||||    
T  39397934 tcaccatagaattttccat 39397916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 54499332 - 54499422
Alignment:
Q  21 gagactaaacttttgatgtcatt-gtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| |||||||||||||||| |||||||  |||||||||||||||||||| |||| || ||||| ||||||||||| || ||||||||    
T  54499332 gagactgaacttttgatgtcattagtacaaacggtggggtgttactcacaacacttttgatgctatagtgttaacttcaccagaaaagtca 54499422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 19089549 - 19089634
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagt 108  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||  ||| |||| ||| |||| ||||||||||| |||||||||    
T  19089549 gactgaacttttgatgtcattatacaaacagtggggtgttactcattacaattttgatattatagtgttaacttcatcaaaaaagt 19089634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 32592218 - 32592121
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| |||||||||||||| | |||||| ||||| ||||||||| ||||| |||| ||||| || ||||||||||| |||||||||||    
T  32592218 atactaaggggactgaacttttgatgtcactatacaaacagtggagtgttactctcaacacttttgatactgtagtgttaacttcatcaaaaaagtca 32592121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 25701153 - 25701253
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||| ||| |||| ||  |||||||||||||| | ||||||||||| | || ||||||    
T  25701153 gactgaacttttgatgtcactgtacaaacagtagggtgttactcactacacttttgatgttataatgttaactttaccaaaaaagtcattatcatgactt 25701252  T
Q  123 c 123  Q
    |    
T  25701253 c 25701253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 36493774 - 36493897
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| |||||||||||||| |||||||| | ||||||||||||||| | |||||| ||  |||| | ||||||||| ||||||||| | |    
T  36493774 atactatggggactgaacttttgatgtcactgtacaaacaatggggtgttactcactatatttttgatggtatagtattaacttcaccaaaaaagttatt 36493873  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||| ||||||| |  |||||||||    
T  36493874 ttcatgacttcaccatagaatttt 36493897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 55241190 - 55241317
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||| || |||||||| ||||||||||||||| ||||| |||| ||| |||| | |||||||||  | |||||||| |    
T  55241190 atactatggggactgaacttttgatgccactgtacaaacagtggggtgttactcgcaacaattttgataatatagtattaacttcactagaaaagtcatt 55241289  T
Q  113 ttcgtgacttcccagtagaattttccat 140  Q
     || ||||||| |  |||||||||||||    
T  55241290 ctcatgacttcaccatagaattttccat 55241317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 30002710 - 30002820
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| | ||||| |||||||||||||| |||||||| |||| |||||||||||||||| |||| || ||| | ||||||||||| || |||| ||| |    
T  30002710 atactaagaagactgaacttttgatgtcactgtacaaacagtgaggtgttactcacaacacttttgatgctacagtgttaacttcaccagaaaaatcatt 30002809  T
Q  113 ttcgtgacttc 123  Q
    ||  |||||||    
T  30002810 ttaatgacttc 30002820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 7703642 - 7703545
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| || |||| ||||||||||||||  ||||||| |||||||||||||| |||||| |||| ||  |||| ||||||||||| || ||||||||    
T  7703642 atactatggggactgaacttttgatgtcaccgtacaaacagtggggtgttactgacaacacttttgatgttatagtgttaacttcaccagaaaagtca 7703545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 25184223 - 25184113
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||| |||||||||||||||| ||| | ||||||||||  |||||||| ||  |||| ||||||||||| ||||| ||||| | || ||||||| |      
T  25184223 aactttggatgtcattgtacaaacagtagagtgttactcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcacca 25184124  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  25184123 tagaattttcc 25184113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 32912681 - 32912791
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||| ||||| |||||||| | ||||||||||||  |||||||| ||  |||| ||||||||||| ||||||||||| | |  ||||||| |      
T  32912681 aacttttgatatcattctacaaatactagggtgttactcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcacca 32912780  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  32912781 tagaattttcc 32912791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 37287844 - 37287766
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||| || |||||||| ||||||||||||||||||||| |||| ||  |||| ||||||||| | |||||||    
T  37287844 aacttttgatgccactgtacaaacagtggggtgttactcacaacacttttgatgttatagtgttaactttaccaaaaaa 37287766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 879634 - 879727
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||||| | ||| ||||||||||||||||||||||||| | || |||||||||||  |||||||| ||  |||| |||| |||||| |||||||    
T  879634 atactatgaagattaaacttttgatgtcattgtacaaacaatgaggtgttactcattacatttttgatgttatagtgtttacttcaccaaaaaa 879727  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 47253863 - 47253751
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||| ||| | |||| |||||||||||||| |||| ||  |||| ||||||||||| ||||||||||| | || ||||||    
T  47253863 gactgaacttttgatgtcactgtataaacaatggg-tgttactcacaacacttttgatgatatagtgttaacttcaccaaaaaagtcattctcatgactt 47253765  T
Q  123 cccagtagaatttt 136  Q
    | |  |||||||||    
T  47253764 caccatagaatttt 47253751  T

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Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 34948193 - 34948293
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || | |||||| ||||||||||||||||||||| |||| ||  |||| ||||||||||  || |||||||| | || ||||||    
T  34948193 gactgaacttttgatgccactttacaaacagtggggtgttactcacaacacttttgatgttatagtgttaacttcgccagaaaagtcattctcatgactt 34948292  T
Q  123 c 123  Q
    |    
T  34948293 c 34948293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 37663837 - 37663881
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactca 67  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  37663837 gactgaacttttgatgtcattgtacaaacagtggggtgttactca 37663881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 4598107 - 4598021
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| ||||||||||| || |||||||| |||||||||||||||||||||  ||| ||  |||| ||||||||||| || ||||||||    
T  4598107 gactgaacttttgatgccactgtacaaacagtggggtgttactcacaaca-ctttgatgttatagtgttaacttcaccagaaaagtca 4598021  T

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Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 23761197 - 23761114
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaactt 96  Q
    |||||| || |||| |||||||||||||| | |||||| |||| |||||||||||||||| |||| ||  |||| |||||||||    
T  23761197 atactatggggactgaacttttgatgtcactatacaaacagtgaggtgttactcacaacacttttgatgttatagtgttaactt 23761114  T

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Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 29584286 - 29584381
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||| | ||||| ||||||||||| ||||||||||| |||| |||||||||  ||||| |||| ||  |||| ||||||||||| || ||||||||    
T  29584286 atactatgaagactgaacttttgatgccattgtacaaacagtgaggtgttact--caacacttttgatgttatagtgttaacttcaccagaaaagtca 29584381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 35025674 - 35025784
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    ||||||||  |||| ||||||||||||||  ||| ||| ||||||||| ||||||| ||| |||| || ||||| |||| |||||| || |||| ||| |    
T  35025674 atactacgaggactgaacttttgatgtcaacgtataaacagtggggtgctactcactacacttttgatgctatagtgttgacttcaccagaaaaatcatt 35025773  T
Q  113 ttcgtgacttc 123  Q
    ||| |||||||    
T  35025774 ttcatgacttc 35025784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 50697352 - 50697242
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||||||||||||  || |||||||||||   | |||||||||  |||| |||| ||||||  |||||| ||| |||  ||||||| | |    
T  50697352 aacttttgatgtcattgtacaaacggtagggtgttactcgttatattttttatgttatagtgtttacttcactaaaaaaatcatttttatgacttcaccg 50697253  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  50697252 tagaattttcc 50697242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 4396411 - 4396326
Alignment:
Q  53 gtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtagaattttcc 138  Q
    |||||||||||||||  |||||||||||  |||| |||||||||||  |||||||||| |||  ||||||| |  |||||||||||    
T  4396411 gtggggtgttactcattacattttttatgttatagtgttaacttcactaaaaaagtcatttttatgacttcactatagaattttcc 4396326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 28003082 - 28003199
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| ||||| ||  |||| || ||| |||| || ||||| |||| |||||| || |||||||| | || ||||||    
T  28003082 gactgaacttttgatgtcactgtacaaacagtggagtactactgactacacttttgatgctatagtgttgacttcaccagaaaagtcattctcatgactt 28003181  T
Q  123 cccagtagaattttccat 140  Q
    | |  |||||||||||||    
T  28003182 caccatagaattttccat 28003199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 50764840 - 50764791
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttt 77  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||| ||||    
T  50764840 aacttttgatgtcaccgtacaaacagtggggtgttactcacaacactttt 50764791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 19440744 - 19440864
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgac-t 121  Q
    |||| ||||||||||| |||||||||||  |||| |||||| |||  |||||||| ||  |||| ||||||| ||| ||||||||||| | || |||| |    
T  19440744 gactgaacttttgatgccattgtacaaacggtggagtgttaatcattacatttttgatgttatagtgttaacatcaccaaaaaagtcattctcatgactt 19440843  T
Q  122 tcccagtagaattttccatat 142  Q
    || |  |||||||||||||||    
T  19440844 tcaccatagaattttccatat 19440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 46888253 - 46888353
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| |  ||||||||||||||||| |||||||| ||| |||| ||  |||| | ||||||||| || |||||| | |||| ||||||    
T  46888253 gactgaacttttgatgccgctgtacaaatagtggggtattactcactacaattttgatgttatagtattaacttcatcagaaaagttattttcttgactt 46888352  T
Q  123 c 123  Q
    |    
T  46888353 c 46888353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 3042718 - 3042611
Alignment:
Q  31 ttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccagtag 130  Q
    |||||||||||||||| |||  ||||||| |||||||  ||||||| |||  |||| ||||||||||| ||||||| ||| |||  ||| ||| |  |||    
T  3042718 ttttgatgtcattgtataaacggtggggtattactcattacattttgtatgttatagtgttaacttcaccaaaaaaatcatttttatgatttcaccatag 3042619  T
Q  131 aattttcc 138  Q
    ||||||||    
T  3042618 aattttcc 3042611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 55477987 - 55478106
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaata----gtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtg 118  Q
    |||| ||||||||||||||||||||||| |    |||| |||||||||   |||||||| ||  |||| ||||||||||| ||||||| ||| | || ||    
T  55477987 gactgaacttttgatgtcattgtacaaacaaacagtggagtgttactcgttacatttttgatgttatagtgttaacttcaccaaaaaaatcattctcatg 55478086  T
Q  119 acttcccagtagaattttcc 138  Q
    ||||| |  |||||||||||    
T  55478087 acttcaccatagaattttcc 55478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 4934303 - 4934360
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtgggg-tgttactcacaacattttttatacta 84  Q
    ||||||||||| || |||||||| | ||||| |||||||||| |||||||||||||||    
T  4934303 aacttttgatgccagtgtacaaacaatgggggtgttactcactacattttttatacta 4934360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 33816619 - 33816704
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||| ||||||| ||||||||||| ||  ||| |||||||| |||| ||||||| ||| |||| || ||| |||||| ||||||    
T  33816619 atactatggagactgaacttttgatgccaccgtataaatagtgaggtgctactcactacacttttgatgctacaatgttgacttca 33816704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 249 - 134
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||| || |||||||| |||||||||||    
T  249 gactgaacttttgatgccattgtacaaacagtggagtgttactcacaacattttttatactacagtgttaacttcaccagaaaagtcattttcgtgactt 150  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  149 caccatagaattttcc 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 94457 - 94545
Alignment:
Q  27 aaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttc 115  Q
    |||||||||||| || |||||||| ||||||||||||||||| ||| |||| ||  |||||||||||||||| || |||||||| ||||    
T  94457 aaacttttgatgccactgtacaaacagtggggtgttactcactacaattttgatgttataatgttaacttcatcagaaaagtcattttc 94545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 238568 - 238690
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || |||| ||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |    
T  238568 atactatggggactgaacttttgatgtcattgtacaaacagtgga-tgttactcacaacatttttaatactatagtgttaacttcaccaaaaaagttatt 238666  T
Q  113 ttcgtgacttcccagtagaatttt 136  Q
    ||||||||||| |  |||||||||    
T  238667 ttcgtgacttcactatagaatttt 238690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 15752140 - 15752022
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| ||||||||||| |||| |||||||||||| | |||||||||  |||| ||||||||||| ||||||||||| | || ||||||    
T  15752140 gactgaacttttgatgccattgtacaaacagtgaggtgttactcactatattttttatgttatagtgttaacttcaccaaaaaagtcattctcatgactt 15752041  T
Q  123 cccagtagaattttccata 141  Q
    | |  ||||||||| ||||    
T  15752040 caccatagaatttttcata 15752022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 47279300 - 47279200
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||| |||| || |||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| ||| | || ||||||    
T  47279300 gactgaactttcgatgccactgtacaaacagtggggtgttactcacaacacttttgatagtataatgttaacttcaccaaaaaaatcattctcatgactt 47279201  T
Q  123 c 123  Q
    |    
T  47279200 c 47279200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11742415 - 11742502
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| |||||||||||||| |||||||| |||||||||||||| |||||| |||| ||| |||| ||||||||||| || ||||||||    
T  11742415 gactgaacttttgatgtcactgtacaaacagtggggtgttacttacaacacttttgataatatagtgttaacttcaccagaaaagtca 11742502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 38823320 - 38823209
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| || |||||||||||||||||||||||| ||||| |||| || ||||| ||||||||| | || |||||||| | || ||||||| |      
T  38823320 aacttttgatgacactgtacaaatagtggggtgttactcgcaacaattttgatgctatagtgttaacttaaccagaaaagtcattctcatgacttcacca 38823221  T
Q  128 tagaattttcca 139  Q
    ||||||||||||    
T  38823220 tagaattttcca 38823209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 1547393 - 1547283
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| || || ||||| ||||| |||||||||||||||||||||||  |||| ||||||||||| || |||||||| | || ||||||| |      
T  1547393 aacttttgatgccactgcacaaacagtggagtgttactcacaacattttttatgttatagtgttaacttcaccagaaaagtcattctcatgacttcacca 1547294  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  1547293 tagaattttcc 1547283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 10922833 - 10922755
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    ||||||||||||||||||||||| |||||||| |||||||  |||||||||||  |||| ||||||||||| |||||||    
T  10922833 aacttttgatgtcattgtacaaacagtggggtcttactcattacattttttatgttatagtgttaacttcaccaaaaaa 10922755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 32267140 - 32267058
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||| ||  |||| |||||||||||  ||||||||||    
T  32267140 aacttttgatgtcattgtacaaacagtggggtgttactcattacatttttgatgttatattgttaacttcacaaaaaaagtca 32267058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 42721145 - 42721031
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||| | |||||||| ||||||||||||||||| | |||||||||  ||||  | |||||||| ||||||| ||| |||| ||||||| |      
T  42721145 aacttttgatgttactgtacaaacagtggggtgttactcactatattttttatgatatagggctaacttcaccaaaaaaatcattttcatgacttcacca 42721046  T
Q  128 tagaattttccatat 142  Q
    |||||||||||||||    
T  42721045 tagaattttccatat 42721031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 48620758 - 48620673
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| ||  |||| |||||||||||    
T  48620758 atactaaggggactgaacttttgatgtcactgtacaaacagtggggtgttactcacaacacttttgatgttatattgttaacttca 48620673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 2959859 - 2959744
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||| |||||||| |||||| ||||||| || ||| |||| ||  |||| ||||||||||| || |||||||| |||| ||||||    
T  2959859 gactgaacttttgatgtcactgtacaaacagtgggatgttacttactacagttttgatgttatagtgttaacttcatcagaaaagtcattttcatgactt 2959760  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  2959759 caccatagaattttcc 2959744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 9903124 - 9903211
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttc 115  Q
    |||||||||||||| |||||||| || |||||||||||||| ||| |||| ||  |||| ||||||||||| ||||||||||| ||||    
T  9903124 aacttttgatgtcactgtacaaacagcggggtgttactcactacagttttgatgttatagtgttaacttcatcaaaaaagtcattttc 9903211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 18422762 - 18422647
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  ||||||||||||||   | |||||| ||  |||| ||||||||||| ||||||||||| |||  ||||||    
T  18422762 gactgaacttttgatgtcattgtacaaacggtggggtgttactcgttatatttttgatgttatagtgttaacttcaccaaaaaagtcatttttatgactt 18422663  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  18422662 caccatagaattttcc 18422647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 51128970 - 51128884
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtc 109  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||  |||||||||||  |||| |||||||||||  |||||||||    
T  51128970 gactgaacttttgatgtcattgtacaaacggtggagtgttactcattacattttttatgttatagtgttaacttcactaaaaaagtc 51128884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 27267254 - 27267378
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| ||||||| ||||||| ||| || |||||||| |||||||||| |||||| ||||||||||| |  || ||||||||||| ||||||| ||| |    
T  27267254 atactatggagactgaacttttaatgccactgtacaaacagtggggtgtcactcactacattttttatgc--tagtgttaacttcaccaaaaaaatcatt 27267351  T
Q  113 ttcgtgacttcccagtagaattttccat 140  Q
     || ||||||| || || ||||||||||    
T  27267352 ctcatgacttcaca-tataattttccat 27267378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 28564846 - 28564938
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttc 115  Q
    |||| ||||||||||||||||||||||| |||  |||||||||||  |||||||| ||  |||| ||||||||||| ||||||| ||| ||||    
T  28564846 gactgaacttttgatgtcattgtacaaacagtaaggtgttactcattacatttttgatgttatagtgttaacttcatcaaaaaaatcattttc 28564938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 7079167 - 7079226
Alignment:
Q  51 tagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||||||||||||||||||| |||| ||| |||| ||||||||||| |||||||||||    
T  7079167 tagtggggtgttactcacaacacttttgatattatagtgttaacttcaccaaaaaagtca 7079226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 10182073 - 10182188
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || |||||||| ||||| ||||||| ||| | |||||||||  || | | ||||||||| ||||||||||| |||| ||||||    
T  10182073 gactgaacttttgatgccactgtacaaacagtggcgtgttacgcactatattttttatgttacagttttaacttcaccaaaaaagtcattttcatgactt 10182172  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  10182173 caccatagaattttcc 10182188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 30254534 - 30254448
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| ||||||||||||||||||||||| |||| | | |||||||  |||||||| ||  |||| |||||||||||||||||||||||    
T  30254534 gactgaacttttgatgtcattgtacaaacagtgtg-tattactcattacatttttgatgttatattgttaacttcaacaaaaaagtca 30254448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 23999453 - 23999375
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaa 106  Q
    |||||||||||||||| ||||||||||||||||||||||   | |||||||||  | || ||||||||||| |||||||    
T  23999453 aacttttgatgtcattctacaaatagtggggtgttactcgttatattttttatgttgtagtgttaacttcaccaaaaaa 23999375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 15383054 - 15382929
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    ||||||||  |||| ||||||||||| |||||||||||  ||||| |||||||||  |||||||| ||  |||| |||||| |||| ||||||||||| |    
T  15383054 atactacgatgactgaacttttgatgacattgtacaaacggtgggatgttactcattacatttttgatgttatagtgttaatttcaccaaaaaagtcatt 15382955  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
    ||  | ||||| |  |||||||||||    
T  15382954 tttataacttcaccatagaattttcc 15382929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 21289783 - 21289726
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttat 80  Q
    |||| ||||||||||| || |||||||| ||||||||||||||||| |||||||||||    
T  21289783 gactgaacttttgatgccactgtacaaacagtggggtgttactcactacattttttat 21289726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 32216176 - 32216091
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||||||  |||| ||||||||| | ||||||||||| ||||| ||||||||||| |||||||| ||  |||| |||||||||||    
T  32216176 atactacgaggactgaacttttgacgccattgtacaaacagtggtgtgttactcactacatttttgatgttatagtgttaacttca 32216091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 37451397 - 37451297
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||||||||||||||  || |||||||||| |  |||||||| ||  |||| ||||||||| | ||||||||||| |||  ||||||    
T  37451397 gactgaacttttgatgtcattgtacaaacggtagggtgttacttattacatttttgatgttatagtgttaactttaccaaaaaagtcatttttatgactt 37451298  T
Q  123 c 123  Q
    |    
T  37451297 c 37451297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 27533050 - 27533132
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    ||||||||||| || |||||||| |||||| |||||| ||||| | |||| || ||||| ||||||||||| || ||||||||    
T  27533050 aacttttgatgccactgtacaaagagtgggttgttacccacaatacttttgatgctatagtgttaacttcaccagaaaagtca 27533132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 3535057 - 3534968
Alignment:
Q  9 gataatactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    ||||||| || || |||| |||||||||||||| || ||||| |||  |||||||||||||||| |||| ||  |||| |||||||||||    
T  3535057 gataatattaaggggactgaacttttgatgtcactgcacaaacagtaaggtgttactcacaacacttttgatgttatagtgttaacttca 3534968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 37618964 - 37619048
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtg--ttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||||||||||||||| |||||| |||||||||  |||||||  | |||||| ||  |||| ||||||||||| |||||||||||    
T  37618964 aacttttgatgtcattttacaaacagtggggtgttttactcattaaatttttgatgttatagtgttaacttcaccaaaaaagtca 37619048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 39393504 - 39393379
Alignment:
Q  13 atactacggagactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaat 112  Q
    |||||| || || ||||||||||||| || |||||||| | ||  || |||||||||||| |||| || ||||| |||||||||||  | |||||||| |    
T  39393504 atactatggggattaaacttttgatgccactgtacaaacaatgaagtattactcacaacacttttgatgctatagtgttaacttcattagaaaagtcatt 39393405  T
Q  113 ttcgtgacttcccagtagaattttcc 138  Q
     || | ||||| | ||||||||||||    
T  39393404 ctcataacttcaccgtagaattttcc 39393379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 47682564 - 47682658
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggg-gtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttc 123  Q
    ||||||||||  || |||||||  |||||| ||||||||||||||||||||||| |  || ||||||||||| ||||||||||| | || |||||||    
T  47682564 aacttttgataccactgtacaagcagtgggagtgttactcacaacattttttatgc--tagtgttaacttcaccaaaaaagtcactctcatgacttc 47682658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 3309253 - 3309135
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||  || |||||||| |||||| |||||||||||||| |||| ||  |||| ||||||||| | || |||||||| | || ||||||  |      
T  3309253 aacttttgataccactgtacaaacagtggg-tgttactcacaacacttttgatgttatagtgttaactttaccagaaaagtcattctcatgactttacca 3309155  T
Q  128 tagaattttccatatttaaa 147  Q
    ||||||||||||| ||||||    
T  3309154 tagaattttccatttttaaa 3309135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 16415752 - 16415641
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtg-gggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttccca 126  Q
    ||||||||||| || |||||||| | |  ||||||||||||| ||| |||| || ||||| ||||||||||| || |||||||| | || ||||||| |     
T  16415752 aacttttgatgccactgtacaaacatttagggtgttactcactacacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcacc 16415653  T
Q  127 gtagaattttcc 138  Q
     |||||||||||    
T  16415652 ttagaattttcc 16415641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 34012442 - 34012557
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| ||||||||||| || | |||||| ||||| ||||||||||| ||| | || ||  |||| ||||||||||| || ||| |||| |||| ||||||    
T  34012442 gactgaacttttgatgccactttacaaacagtggagtgttactcactacagtgttgatgttatagtgttaacttcatcataaacgtcattttcatgactt 34012541  T
Q  123 cccagtagaattttcc 138  Q
    | |  |||||||||||    
T  34012542 caccatagaattttcc 34012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 19899839 - 19899949
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    ||||||||||| |||| |||||| |||| ||||||||||   |||||||| ||  |||| ||||||||||| ||||||| ||| | |  ||||||| |      
T  19899839 aacttttgatgccattctacaaacagtgaggtgttactcgttacatttttgatgttatagtgttaacttcaccaaaaaaatcattattatgacttcacca 19899938  T
Q  128 tagaattttcc 138  Q
    |||||||||||    
T  19899939 tagaattttcc 19899949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 30327017 - 30327133
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgactt 122  Q
    |||| |||||||||||  ||||||||||  || |||| |||||||  |||||||| ||  |||| |||||| ||||  |||||||||| |||  ||||||    
T  30327017 gactgaacttttgatgctattgtacaaacggttgggtattactcattacatttttgatgttatagtgttaaattcacaaaaaaagtcatttttatgactt 30327116  T
Q  123 cccagtagaattttcca 139  Q
    | |  ||||||||||||    
T  30327117 cactatagaattttcca 30327133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 146091 - 146199
Alignment:
Q  28 aacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtcaatttcgtgacttcccag 127  Q
    |||||||||||||||| |||||||| ||||||||||||||  |||||||||||  |||||||||||||| | ||||||| ||| | |  ||||||| | |    
T  146091 aacttttgatgtcattctacaaataatggggtgttactcattacattttttatgttataatgttaacttaaccaaaaaaatcattcttatgacttcaccg 146190  T
Q  128 tagaatttt 136  Q
    |||||||||    
T  146191 tagaatttt 146199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 8002 - 7915
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtca 110  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  ||| |||| ||  |||| ||||||||||| |||||||||||    
T  8002 gactgaacttttgatgtcattgtacaaacagtggggtgttactcattacaattttgatgttatagtgttaacttcatcaaaaaagtca 7915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 44072 - 43986
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtc 109  Q
    |||| ||||||| ||| ||||||||||| |  |||||||||||||  |||||||| ||| ||||  |||||||||| ||||||||||    
T  44072 gactgaactttttatgccattgtacaaacaacggggtgttactcattacatttttgatattatagcgttaacttcaccaaaaaagtc 43986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 154715 - 154801
Alignment:
Q  23 gactaaacttttgatgtcattgtacaaatagtggggtgttactcacaacattttttatactataatgttaacttcaacaaaaaagtc 109  Q
    |||| ||||||| ||| ||||||||||| |  |||||||||||||  |||||||| ||| ||||  |||||||||| ||||||||||    
T  154715 gactgaactttttatgccattgtacaaacaacggggtgttactcattacatttttgatattatagcgttaacttcaccaaaaaagtc 154801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 42439 - 42388
Alignment:
Q  47 caaatagtggggtgttactcacaacattttttatactataatgttaacttca 98  Q
    |||||||||||||||||||||||||| |||| ||  |||| |||||||||||    
T  42439 caaatagtggggtgttactcacaacacttttgatgttatagtgttaacttca 42388  T

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