View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_111 (Length: 250)
Name: NF18993_low_111
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_111 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 41215250 - 41215484
Alignment:
| Q |
16 |
atggaagacaataaagtgatgctagttaaccggagtaaaccacaaaatttgtccctaactttgtagagccctcgcaaataggtcaccgagaatattaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41215250 |
atggaagacaataaagtgatgctagttaaccggagtaaaccacaaaatttgtccctaactttgtagagccctcgcaaataggtcactgagaatattaaca |
41215349 |
T |
|
| Q |
116 |
tttcaaaaacatcttcaactctatcaaacattactcatatgatcagtccctcaggcaaacgttaaattatcaatgatccatctatttgataacttactat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41215350 |
tttcaaaaacatcttcaactctatcaaacattactcatatgatcagtccctcaggcaaacgttaaattatcaatgatccatctatttgataacttactat |
41215449 |
T |
|
| Q |
216 |
caatttggtcattaacatcgatagaaagacttgta |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41215450 |
caatttggtcattaacatcgatagaaagacttgta |
41215484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University