View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_112 (Length: 248)

Name: NF18993_low_112
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_112
NF18993_low_112
[»] chr8 (1 HSPs)
chr8 (1-241)||(32916948-32917187)
[»] chr6 (4 HSPs)
chr6 (2-223)||(20874511-20874742)
chr6 (200-241)||(16275425-16275466)
chr6 (200-241)||(22826565-22826606)
chr6 (200-241)||(28319328-28319369)
[»] scaffold1737 (1 HSPs)
scaffold1737 (2-129)||(842-968)
[»] chr2 (3 HSPs)
chr2 (153-233)||(14909260-14909340)
chr2 (200-241)||(19044929-19044970)
chr2 (200-241)||(39835429-39835470)
[»] scaffold0284 (1 HSPs)
scaffold0284 (45-126)||(8574-8654)
[»] chr7 (1 HSPs)
chr7 (44-114)||(6676250-6676318)
[»] scaffold0038 (1 HSPs)
scaffold0038 (200-241)||(110434-110475)
[»] chr3 (2 HSPs)
chr3 (200-241)||(10021367-10021408)
chr3 (200-241)||(42396725-42396766)
[»] chr1 (1 HSPs)
chr1 (200-241)||(29998086-29998127)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32916948 - 32917187
Alignment:
Q  1 ctgggatatgacaatggaaaaataaatatgttaaattgacctaacaaaatacatgtttatttaacatttttaagtcaagatgtggtataaatctcatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32916948 ctgggatatgacaatggaaaaataaatatgttaaattgacctaacaaaatacatgtttatttaacatttt-aagtcaagatgtggtataaatctcatttg 32917046  T
Q  101 tgtggttgctcttatcataatgtgataatctaacccattgtcccgaaagtccaaacattatgattaacaattttgttagtgttttgatgtcannnnnnna 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |    
T  32917047 tgtggttgctcttatcataatgtgataatctaactcattgtcccgaaagtctaaacattatgattaacaattttgttagtgttttgatgtcattttttta 32917146  T
Q  201 atttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32917147 atttcttatcttaaaatttagttctttgatgtcattttctt 32917187  T

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Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 20874511 - 20874742
Alignment:
Q  2 tgggatatgacaatggaaaaataaatatgttaaattgacctaacaaaatacatgtttatttaacatttttaagtcaagatgtggtataaatctcatttgt 101  Q
    |||||||||||| ||| |||||| | |||||| ||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  20874511 tgggatatgacattggcaaaatatacatgttatattgagctaacaaaatacatgtttattaaacatttt-aagtgaagatgtggtataaatctcatttgt 20874609  T
Q  102 gtggttgctcttatcataatgtgataatctaacccattg-----tccc----gaaagtccaaacattatgattaacaa--ttttgttagtgttttgatgt 190  Q
    ||||||||| ||||||||||||||||||  |||||| ||     ||||    |||||||||||||||||||| |||||  |||||||||| |||| ||||    
T  20874610 gtggttgcttttatcataatgtgataattcaacccagtgtaggctcccatctgaaagtccaaacattatgatgaacaaatttttgttagttttttcatgt 20874709  T
Q  191 cannnnnnnaatttcttatcttaaaatttagtt 223  Q
    ||       ||||||||||| ||||||||||||    
T  20874710 catttttttaatttcttatcctaaaatttagtt 20874742  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 16275466 - 16275425
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  16275466 aattttttatcttaaaatttagttattggatgtcattttctt 16275425  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 22826606 - 22826565
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  22826606 aattttttatcttaaaatttagttattggatgtcattttctt 22826565  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 28319328 - 28319369
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  28319328 aattttttatcttaaaatttagttattggatgtcattttctt 28319369  T

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Target: scaffold1737 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 842 - 968
Alignment:
Q  2 tgggatatgacaatggaaaaataaatatgttaaattgacctaacaaaatacatgtttatttaacatttttaagtcaagatgtggtataaatctcatttgt 101  Q
    |||||||||||| ||| |||||| | |||||| ||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  842 tgggatatgacattggcaaaatatacatgttatattgagctaacaaaatacatgtttattaaacatttt-aagtgaagatgtggtataaatctcatttgt 940  T
Q  102 gtggttgctcttatcataatgtgataat 129  Q
    ||||||||| ||||||||||||||||||    
T  941 gtggttgcttttatcataatgtgataat 968  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 14909260 - 14909340
Alignment:
Q  153 aaacattatgattaacaattttgttagtgttttgatgtcannnnnnnaatttcttatcttaaaatttagttctttgatgtc 233  Q
    |||||||||||| ||| |||||||||||||||||||||||       ||||| |||||||||||||||| | |||||||||    
T  14909260 aaacattatgatgaactattttgttagtgttttgatgtcatttatttaattttttatcttaaaatttagatttttgatgtc 14909340  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 19044929 - 19044970
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  19044929 aattttttatcttaaaatttagttattggatgtcattttctt 19044970  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 39835470 - 39835429
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  39835470 aattttttatcttaaaatttagttattggatgtcattttctt 39835429  T

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Target: scaffold0284 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 8654 - 8574
Alignment:
Q  45 caaaatacatgtttatttaacatttttaagtcaagatgtggtataaatctcatttgtgtggttgctcttatcataatgtgat 126  Q
    ||||||||||| |||||  ||||||  |||| |||||||||| | ||||||| ||||||| |||||||||||||||| ||||    
T  8654 caaaatacatgcttattagacatttc-aagtgaagatgtggtgtcaatctcacttgtgtgattgctcttatcataatatgat 8574  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 6676318 - 6676250
Alignment:
Q  44 acaaaatacatgtttatttaacatttttaagtcaagatgtggtataaatctcatttgtgtggttgctctta 114  Q
    ||||||||||||||||||  ||| |||||||| || ||||||||| ||||||| ||||||| |||||||||    
T  6676318 acaaaatacatgtttattagaca-ttttaagt-aaaatgtggtattaatctcacttgtgtgattgctctta 6676250  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 110434 - 110475
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  110434 aattttttatcttaaaatttagttattggatgtcattttctt 110475  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 10021367 - 10021408
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  10021367 aattttttatcttaaaatttagttattggatgtcattttctt 10021408  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 42396766 - 42396725
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  42396766 aattttttatcttaaaatttagttattggatgtcattttctt 42396725  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 29998127 - 29998086
Alignment:
Q  200 aatttcttatcttaaaatttagttctttgatgtcattttctt 241  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  29998127 aattttttatcttaaaatttagttattggatgtcattttctt 29998086  T

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