View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_113 (Length: 247)
Name: NF18993_low_113
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_113 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 27548876 - 27549104
Alignment:
| Q |
18 |
tttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactattgtcggtctcctacaatagtgtgagctttacaagcgagacgtta |
117 |
Q |
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| T |
27548876 |
tttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactat-gtcggtctcctacaatagtgtgagctttacaagcgagacgtta |
27548974 |
T |
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| Q |
118 |
tgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagc |
217 |
Q |
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| T |
27548975 |
tgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattggttcaagtatgagatggaaaacatactacagtcagtgagttgtagtttgagc |
27549074 |
T |
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| Q |
218 |
agcagccacagtagaaaccattgagtccac |
247 |
Q |
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| T |
27549075 |
agcagccacagtagaaaccattgagtccac |
27549104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 27437394 - 27437247
Alignment:
| Q |
18 |
tttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactattgtcggtctcctacaatagtgtgagctttacaagcgagacgtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||| ||| |
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| T |
27437394 |
tttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactat-gccagtctccaacaatagtgtgagctttacaagcgagacatta |
27437296 |
T |
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| Q |
118 |
tgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
166 |
Q |
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| T |
27437295 |
tgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattgg |
27437247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 27945701 - 27945617
Alignment:
| Q |
163 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccac |
247 |
Q |
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| T |
27945701 |
ttggttcaagtatgagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccac |
27945617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 27437209 - 27437125
Alignment:
| Q |
163 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccac |
247 |
Q |
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| T |
27437209 |
ttggtacatgtatgagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccac |
27437125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27945883 - 27945763
Alignment:
| Q |
18 |
tttacaatttgataagatgtctcatgttcaaaatggatctactaa-cagtaaactattgtcggtctcctacaatagtgtgagctttacaagcgagacgtt |
116 |
Q |
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|||| ||||||||||||| ||||| |||||||||| || || ||| ||||||||||| || |||||||| ||||||||||||| ||||| ||||| || |
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| T |
27945883 |
tttaaaatttgataagatatctcaagttcaaaatgaatgtagtaaacagtaaactatcatcagtctcctataatagtgtgagctcaacaagtgagacatt |
27945784 |
T |
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| Q |
117 |
atgtgctggaagacatcttcg |
137 |
Q |
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| T |
27945783 |
atgtgctggaagacatcttcg |
27945763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 27504097 - 27504035
Alignment:
| Q |
104 |
caagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
166 |
Q |
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| T |
27504097 |
caagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattgg |
27504035 |
T |
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