View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_114 (Length: 246)
Name: NF18993_low_114
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_114 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 6140988 - 6140762
Alignment:
| Q |
20 |
taatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaatt |
119 |
Q |
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| T |
6140988 |
taatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaatt |
6140889 |
T |
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| Q |
120 |
acagcatctgatgttcatggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagt |
219 |
Q |
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| T |
6140888 |
acagcatctgatgttcatggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagt |
6140789 |
T |
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| Q |
220 |
tagatgatttgtgtcgagtacttggtg |
246 |
Q |
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| T |
6140788 |
tagatgatttgtgtcgagtacttggtg |
6140762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 6179044 - 6178819
Alignment:
| Q |
21 |
aatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaatta |
120 |
Q |
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||||||||||||||||||||| ||| ||||| ||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
6179044 |
aatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaatta |
6178945 |
T |
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| Q |
121 |
cagcatctgatgttcatggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagtt |
220 |
Q |
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| T |
6178944 |
cagcgtctgatgttcatggacttcacacgttcatcaagaggaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgcttcacagtt |
6178845 |
T |
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| Q |
221 |
agatgatttgtgtcgagtacttggtg |
246 |
Q |
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| T |
6178844 |
agatgatttgtgccgagtacttggtg |
6178819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 6187834 - 6187609
Alignment:
| Q |
21 |
aatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaatta |
120 |
Q |
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||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| ||||| |||||||| ||||||||||||||| |||||| |
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| T |
6187834 |
aatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgtttgtaatcagcttcttcgtgagctactgaagcgagaaatta |
6187735 |
T |
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| Q |
121 |
cagcatctgatgttcatggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagtt |
220 |
Q |
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|||| ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||| |
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| T |
6187734 |
cagcgtctgatgttcacggacttcacacattcatcacgaggaggctctttcgcaaaaaagttttcattgttcttgatgatgttaataatacgacacagtt |
6187635 |
T |
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| Q |
221 |
agatgatttgtgtcgagtacttggtg |
246 |
Q |
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| T |
6187634 |
agatgatttgtgtcgcgtacttggtg |
6187609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 6123976 - 6124035
Alignment:
| Q |
174 |
aaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgt |
233 |
Q |
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|||| |||||||||||||||||||||||||||||||| || || |||||| |||||||| |
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| T |
6123976 |
aaaagagttttcattgtacttgatgatgttgataatggtatgcaattagattatttgtgt |
6124035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 6046302 - 6046246
Alignment:
| Q |
176 |
aaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtg |
232 |
Q |
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| T |
6046302 |
aaaatttttcattgtacttgatgatgtggataatgctgcacaattagaatatttgtg |
6046246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 6062548 - 6062512
Alignment:
| Q |
176 |
aaaagttttcattgtacttgatgatgttgataatgct |
212 |
Q |
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| T |
6062548 |
aaaagttttcattgtacttgatgacgtagataatgct |
6062512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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