View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_121 (Length: 241)
Name: NF18993_low_121
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 1977251 - 1977470
Alignment:
| Q |
7 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg |
106 |
Q |
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| T |
1977251 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg |
1977350 |
T |
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| Q |
107 |
tacccttgacaatctcaatgacttgctcattccattccacatgttggccacttctttatcactttttaagtgatttagaataatccctttttctcttaga |
206 |
Q |
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| T |
1977351 |
tacccttgacaatctcaatgacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga |
1977450 |
T |
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| Q |
207 |
atctttgtatcgttctcgga |
226 |
Q |
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||||||| ||| |||||||| |
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| T |
1977451 |
atctttgcatctttctcgga |
1977470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 1984172 - 1984406
Alignment:
| Q |
7 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg |
106 |
Q |
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| T |
1984172 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactctggtttacatcttcaatagtcttatccaagaatgg |
1984271 |
T |
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| Q |
107 |
tacccttgacaatctcaatgacttgctcattccattccacatgttggccacttctttatcactttttaagtgatttagaataatccctttttctcttaga |
206 |
Q |
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| T |
1984272 |
tacccttgacaatctcaataacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga |
1984371 |
T |
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| Q |
207 |
atctttgtatcgttctcggaatacataattccatt |
241 |
Q |
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| T |
1984372 |
atctttgcatcgttctcggaatctataattccatt |
1984406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 1949155 - 1948951
Alignment:
| Q |
7 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg |
106 |
Q |
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|||||||||||||||||||||||||||||||| | || || | ||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1949155 |
atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa |
1949056 |
T |
|
| Q |
107 |
tacccttgacaatctcaatgacttgctcattccattccacatgttggccacttctttatcactttttaagtgatttagaataatccctttttctcttaga |
206 |
Q |
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| T |
1949055 |
tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga |
1948956 |
T |
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| Q |
207 |
atctt |
211 |
Q |
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||||| |
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| T |
1948955 |
atctt |
1948951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 5626108 - 5625973
Alignment:
| Q |
74 |
gttaacatcttcaatagtcttatccaagaatggtacccttgacaatctcaatgacttgctcattccattccacatgttggccacttctttatcacttttt |
173 |
Q |
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||||||||| ||||| ||||||||||||||| ||||||| |||| | | || ||| ||||||||||||||| || ||||| |||| |||||||||| |
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| T |
5626108 |
gttaacatcctcaatgaccttatccaagaatggaacccttgtcaatttgatggatttgttcattccattccacaaattagccacctcttgatcacttttt |
5626009 |
T |
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| Q |
174 |
aagtgatttagaataatccctttttctcttagaatc |
209 |
Q |
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| T |
5626008 |
aaatggttcaaaataacccctttttctctaagaatc |
5625973 |
T |
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